Variant report

Variant	rs11042433
Chromosome Location	chr11:9611869-9611870
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9548599..9552302-chr11:9610096..9614093,4	K562	blood:
2	chr11:9471434..9473204-chr11:9611341..9613094,2	K562	blood:
3	chr11:9596567..9599546-chr11:9610760..9612310,2	MCF-7	breast:
4	chr11:9589366..9592285-chr11:9609804..9612652,2	MCF-7	breast:
5	chr11:9481394..9483702-chr11:9610915..9612736,2	K562	blood:

Variant related genes	Relation type
ENSG00000166483	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000268403	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11042430	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11042436	0.81[AMR][1000 genomes]
rs11042438	0.81[AMR][1000 genomes]
rs11042439	0.81[AMR][1000 genomes]
rs11042440	0.81[AMR][1000 genomes]
rs11042442	0.81[AMR][1000 genomes]
rs11042444	0.81[AMR][1000 genomes]
rs12416887	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12419221	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12422111	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35042828	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35084800	0.81[AMR][1000 genomes]
rs35198914	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36084509	0.81[AMR][1000 genomes]
rs4910480	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61876835	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7120616	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9597000-9613400	Weak transcription	Gastric	stomach
2	chr11:9597000-9622000	Weak transcription	Spleen	Spleen
3	chr11:9597200-9635000	Weak transcription	Pancreas	Pancrea
4	chr11:9597600-9615200	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:9598400-9612000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:9599200-9612200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:9599400-9612200	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:9599400-9612400	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr11:9599400-9612400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:9599400-9612400	Strong transcription	Fetal Thymus	thymus
11	chr11:9599600-9622800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:9599800-9612400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:9599800-9617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:9599800-9622400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:9600000-9612000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:9600000-9612400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:9600200-9612000	Strong transcription	Osteobl	bone
18	chr11:9600200-9612600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:9600200-9612600	Strong transcription	HUVEC	blood vessel
20	chr11:9600200-9613400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:9600400-9612400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:9600400-9612600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:9600600-9612200	Strong transcription	Fetal Muscle Leg	muscle
24	chr11:9600800-9612200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:9601000-9612000	Strong transcription	Liver	Liver
26	chr11:9601000-9612200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:9601000-9612400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:9601000-9612400	Strong transcription	NH-A	brain
29	chr11:9601000-9612600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:9601200-9612000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:9601400-9612200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:9601400-9612400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:9601400-9612400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:9601400-9612400	Strong transcription	Fetal Intestine Large	intestine
35	chr11:9601400-9612400	Strong transcription	Placenta	Placenta
36	chr11:9601400-9613200	Strong transcription	NHDF-Ad	bronchial
37	chr11:9601400-9622600	Weak transcription	Right Atrium	heart
38	chr11:9601600-9622200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:9602800-9612400	Strong transcription	Dnd41	blood
40	chr11:9604600-9613000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr11:9605000-9618200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:9605600-9612200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr11:9605600-9612400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:9605600-9612400	Strong transcription	HMEC	breast
45	chr11:9605600-9612400	Strong transcription	HSMM	muscle
46	chr11:9605800-9612200	Strong transcription	GM12878-XiMat	blood
47	chr11:9606000-9612200	Strong transcription	Hela-S3	cervix
48	chr11:9606000-9612800	Strong transcription	Primary B cells from cord blood	blood
49	chr11:9606000-9614200	Weak transcription	Stomach Mucosa	stomach
50	chr11:9606200-9612400	Strong transcription	Monocytes-CD14+_RO01746	blood

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