Variant report

Variant	rs10770066
Chromosome Location	chr11:9830732-9830733
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10734650	0.88[EUR][1000 genomes]
rs4910066	0.88[EUR][1000 genomes]
rs4910506	0.88[EUR][1000 genomes]
rs7928572	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9809600-9832600	Weak transcription	Colonic Mucosa	Colon
2	chr11:9812200-9862200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:9818600-9881400	Weak transcription	Spleen	Spleen
4	chr11:9824200-9837200	Weak transcription	Hela-S3	cervix
5	chr11:9824200-9867600	Weak transcription	Psoas Muscle	Psoas
6	chr11:9824400-9831800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:9824400-9841400	Weak transcription	Fetal Heart	heart
8	chr11:9824800-9831400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:9824800-9834400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:9825400-9838600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:9825800-9837400	Weak transcription	NH-A	brain
12	chr11:9825800-9837800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:9825800-9841600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:9826400-9830800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:9826600-9830800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:9826800-9830800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:9826800-9868200	Weak transcription	Aorta	Aorta
18	chr11:9827000-9830800	Strong transcription	Fetal Muscle Leg	muscle
19	chr11:9827800-9830800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:9827800-9830800	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr11:9828400-9830800	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:9828400-9831600	Strong transcription	Fetal Intestine Large	intestine
23	chr11:9828600-9830800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:9828600-9830800	Strong transcription	Fetal Intestine Small	intestine
25	chr11:9828600-9830800	Strong transcription	Pancreas	Pancrea
26	chr11:9828600-9831000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:9828600-9834800	Strong transcription	HSMM	muscle
28	chr11:9829000-9834400	Strong transcription	HSMMtube	muscle
29	chr11:9829200-9830800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:9829200-9830800	Strong transcription	Fetal Brain Male	brain
31	chr11:9829200-9832400	Weak transcription	Brain Anterior Caudate	brain
32	chr11:9829400-9832000	Strong transcription	Fetal Stomach	stomach
33	chr11:9829600-9830800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:9829600-9830800	Enhancers	Colon Smooth Muscle	Colon
35	chr11:9829600-9832600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:9829600-9837400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:9829600-9837600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:9829600-9838400	Weak transcription	Fetal Thymus	thymus
39	chr11:9829600-9841200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:9829600-9841800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:9829600-9853000	Weak transcription	Brain Angular Gyrus	brain
42	chr11:9829600-9853000	Weak transcription	Brain Substantia Nigra	brain
43	chr11:9829600-9865600	Weak transcription	Gastric	stomach
44	chr11:9829800-9831400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:9829800-9832400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:9829800-9832400	Weak transcription	Fetal Kidney	kidney
47	chr11:9829800-9832600	Weak transcription	Osteobl	bone
48	chr11:9829800-9833400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:9829800-9835800	Weak transcription	NHEK	skin
50	chr11:9829800-9836600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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