Variant report

Variant	rs10770111
Chromosome Location	chr11:10417080-10417081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10325849..10328171-chr11:10416407..10418101,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148926	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10840404	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12574619	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577015	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35130571	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60472696	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71476869	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs752373	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1037131	chr11:10401998-10429998	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553477	chr11:10403539-10429998	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10409600-10420000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:10409600-10420000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:10412800-10417200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:10412800-10422200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:10413000-10420000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:10413600-10421000	Enhancers	Placenta	Placenta
7	chr11:10413800-10417200	Enhancers	Brain Anterior Caudate	brain
8	chr11:10413800-10417800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:10413800-10417800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:10413800-10417800	Enhancers	Osteobl	bone
11	chr11:10413800-10418200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:10413800-10418400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:10413800-10420400	Enhancers	NHLF	lung
14	chr11:10414000-10417400	Enhancers	Fetal Stomach	stomach
15	chr11:10414000-10417800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:10414200-10420000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:10414400-10420000	Weak transcription	NHDF-Ad	bronchial
18	chr11:10414600-10427400	Weak transcription	Ovary	ovary
19	chr11:10415200-10417200	Enhancers	Fetal Lung	lung
20	chr11:10415400-10419600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr11:10415400-10419600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
23	chr11:10415800-10417200	Flanking Active TSS	A549	lung
24	chr11:10415800-10417400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:10415800-10417800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:10416000-10417400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:10416200-10417400	Enhancers	NHEK	skin
28	chr11:10416200-10417800	Enhancers	Adipose Nuclei	Adipose
29	chr11:10416200-10418000	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:10416400-10417600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:10416600-10417400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:10416600-10417400	Enhancers	Fetal Muscle Leg	muscle
33	chr11:10416600-10419800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:10416800-10417200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr11:10416800-10417200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr11:10416800-10417400	Enhancers	Primary hematopoietic stem cells	blood
37	chr11:10416800-10417400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:10416800-10417800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:10416800-10417800	Enhancers	Left Ventricle	heart
40	chr11:10416800-10418200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr11:10416800-10423200	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:10417000-10417200	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr11:10417000-10417400	Enhancers	Lung	lung
44	chr11:10417000-10417800	Enhancers	Pancreas	Pancrea
45	chr11:10417000-10419200	Weak transcription	Liver	Liver
46	chr11:10417000-10419400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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