Variant report

Variant	rs12574619
Chromosome Location	chr11:10416020-10416021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10414737..10416495-chr11:10419246..10421042,2	MCF-7	breast:
2	chr11:10410521..10412872-chr11:10414972..10416524,2	K562	blood:

Variant related genes	Relation type
ENSG00000221574	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10770111	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840404	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12577015	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35130571	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60472696	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71476869	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs752373	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1037131	chr11:10401998-10429998	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553477	chr11:10403539-10429998	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10409600-10420000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:10409600-10420000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:10411000-10417000	Weak transcription	Lung	lung
4	chr11:10411400-10416800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:10412800-10416200	Weak transcription	Adipose Nuclei	Adipose
6	chr11:10412800-10416800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:10412800-10417200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:10412800-10422200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:10413000-10420000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:10413600-10421000	Enhancers	Placenta	Placenta
11	chr11:10413800-10416600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:10413800-10416800	Enhancers	Brain Hippocampus Middle	brain
13	chr11:10413800-10417200	Enhancers	Brain Anterior Caudate	brain
14	chr11:10413800-10417800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10413800-10417800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:10413800-10417800	Enhancers	Osteobl	bone
17	chr11:10413800-10418200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:10413800-10418400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:10413800-10420400	Enhancers	NHLF	lung
20	chr11:10414000-10417400	Enhancers	Fetal Stomach	stomach
21	chr11:10414000-10417800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:10414200-10416800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:10414200-10420000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:10414400-10416600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:10414400-10416800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:10414400-10420000	Weak transcription	NHDF-Ad	bronchial
27	chr11:10414600-10416400	Enhancers	Brain Substantia Nigra	brain
28	chr11:10414600-10427400	Weak transcription	Ovary	ovary
29	chr11:10414800-10417000	Enhancers	NH-A	brain
30	chr11:10415200-10416200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:10415200-10417200	Enhancers	Fetal Lung	lung
32	chr11:10415400-10416800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:10415400-10419600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr11:10415400-10419600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:10415600-10416200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:10415600-10416600	Enhancers	Brain Cingulate Gyrus	brain
37	chr11:10415600-10417000	Enhancers	Liver	Liver
38	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
39	chr11:10415800-10416400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:10415800-10416600	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr11:10415800-10416600	Enhancers	Gastric	stomach
42	chr11:10415800-10416600	Bivalent Enhancer	HepG2	liver
43	chr11:10415800-10417200	Flanking Active TSS	A549	lung
44	chr11:10415800-10417400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:10415800-10417800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:10416000-10416200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:10416000-10416400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:10416000-10416400	Enhancers	Brain Angular Gyrus	brain
49	chr11:10416000-10416600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:10416000-10417000	Weak transcription	Pancreas	Pancrea

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