Variant report
| Variant | rs10770879 |
|---|---|
| Chromosome Location | chr12:22178691-22178692 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:22177500..22179364-chr12:22197541..22199552,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111726 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11046278 | 1.00[AMR][1000 genomes] |
| rs11046283 | 1.00[AMR][1000 genomes] |
| rs11046284 | 1.00[AMR][1000 genomes] |
| rs11046285 | 1.00[AMR][1000 genomes] |
| rs11046286 | 1.00[AMR][1000 genomes] |
| rs11046287 | 1.00[AMR][1000 genomes] |
| rs11046288 | 1.00[AMR][1000 genomes] |
| rs12296561 | 1.00[AMR][1000 genomes] |
| rs12297555 | 1.00[AMR][1000 genomes] |
| rs12302161 | 1.00[AMR][1000 genomes] |
| rs12302990 | 1.00[AMR][1000 genomes] |
| rs12306240 | 1.00[AMR][1000 genomes] |
| rs12307136 | 1.00[AMR][1000 genomes] |
| rs12309596 | 1.00[AMR][1000 genomes] |
| rs12315697 | 1.00[AMR][1000 genomes] |
| rs12318153 | 1.00[AMR][1000 genomes] |
| rs1861713 | 1.00[AMR][1000 genomes] |
| rs4237917 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4326848 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57275562 | 1.00[AMR][1000 genomes] |
| rs7314865 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73265986 | 1.00[AMR][1000 genomes] |
| rs73265990 | 1.00[AMR][1000 genomes] |
| rs73265997 | 1.00[AMR][1000 genomes] |
| rs73266000 | 1.00[AMR][1000 genomes] |
| rs73267912 | 1.00[AMR][1000 genomes] |
| rs7961937 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7973525 | 1.00[AMR][1000 genomes] |
| rs7977201 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9788008 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051073 | chr12:21910875-22271209 | Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2758298 | chr12:22140834-22339299 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | esv2759883 | chr12:22140834-22736907 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
