Variant report

Variant	rs11046286
Chromosome Location	chr12:22223553-22223554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ST8SIA1-2	chr12:22223506-22223559	NONHSAT027265

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10770879	1.00[AMR][1000 genomes]
rs11046278	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11046283	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11046284	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11046285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11046287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11046288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296561	1.00[AMR][1000 genomes]
rs12297555	1.00[AMR][1000 genomes]
rs12302161	1.00[AMR][1000 genomes]
rs12302990	1.00[AMR][1000 genomes]
rs12306240	1.00[AMR][1000 genomes]
rs12307136	1.00[AMR][1000 genomes]
rs12309596	1.00[AMR][1000 genomes]
rs12315697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12318153	1.00[AMR][1000 genomes]
rs1861713	1.00[AMR][1000 genomes]
rs4237917	1.00[AMR][1000 genomes]
rs4326848	1.00[AMR][1000 genomes]
rs57275562	1.00[AMR][1000 genomes]
rs57886357	1.00[AMR][1000 genomes]
rs7314865	1.00[AMR][1000 genomes]
rs73265986	1.00[AMR][1000 genomes]
rs73265990	1.00[AMR][1000 genomes]
rs73265997	1.00[AMR][1000 genomes]
rs73266000	1.00[AMR][1000 genomes]
rs73267912	1.00[AMR][1000 genomes]
rs73267999	1.00[AMR][1000 genomes]
rs73270009	1.00[AMR][1000 genomes]
rs73270012	1.00[AMR][1000 genomes]
rs7961937	1.00[AMR][1000 genomes]
rs7973525	1.00[AMR][1000 genomes]
rs7977201	1.00[AMR][1000 genomes]
rs9788008	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2758298	chr12:22140834-22339299	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2759883	chr12:22140834-22736907	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv438196	chr12:22195202-22234058	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1850259	chr12:22198865-22244741	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:22202200-22223800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:22203800-22235200	Weak transcription	Gastric	stomach
3	chr12:22209800-22229200	Weak transcription	Thymus	Thymus
4	chr12:22216200-22233200	Weak transcription	K562	blood
5	chr12:22219600-22224200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr12:22220000-22223600	Weak transcription	Fetal Lung	lung
7	chr12:22222000-22224400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr12:22222200-22224600	Enhancers	Fetal Intestine Large	intestine
9	chr12:22223000-22223600	Enhancers	Placenta	Placenta

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