Variant report

Variant	rs10770955
Chromosome Location	chr12:8842752-8842753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8839319..8843626-chr12:8849447..8851652,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166532	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10505735	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10505736	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10842109	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10842130	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10842131	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11046766	0.81[AMR][1000 genomes]
rs11046806	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11046832	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11612882	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11616092	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12297409	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34187657	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35146959	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59449904	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6487333	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7299203	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73053851	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73053860	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73053867	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7976729	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8821600-8845000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:8834800-8844800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:8834800-8848600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:8839200-8843200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr12:8839600-8843200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr12:8840000-8843200	Enhancers	Fetal Stomach	stomach
7	chr12:8840200-8842800	Enhancers	Fetal Thymus	thymus
8	chr12:8840200-8843000	Enhancers	Adipose Nuclei	Adipose
9	chr12:8840200-8843200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:8840800-8843200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:8840800-8845200	Weak transcription	Ovary	ovary
12	chr12:8840800-8849200	Weak transcription	Aorta	Aorta
13	chr12:8840800-8849600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:8841000-8842800	Enhancers	Brain Anterior Caudate	brain
15	chr12:8841000-8842800	Enhancers	Fetal Lung	lung
16	chr12:8841000-8843000	Enhancers	Colon Smooth Muscle	Colon
17	chr12:8841000-8843200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr12:8841000-8844400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr12:8841000-8844600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr12:8841000-8844800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr12:8841000-8844800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr12:8841000-8844800	Weak transcription	Thymus	Thymus
23	chr12:8841000-8844800	Weak transcription	HSMM	muscle
24	chr12:8841000-8845000	Weak transcription	Brain Angular Gyrus	brain
25	chr12:8841000-8845000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:8841000-8845000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr12:8841000-8845000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:8841000-8845000	Weak transcription	HSMMtube	muscle
29	chr12:8841000-8845200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:8841000-8845200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr12:8841000-8845200	Weak transcription	Placenta	Placenta
32	chr12:8841000-8845200	Weak transcription	HMEC	breast
33	chr12:8841000-8845200	Weak transcription	K562	blood
34	chr12:8841000-8845400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:8841000-8845600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr12:8841000-8848400	Genic enhancers	Hela-S3	cervix
37	chr12:8841000-8849400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr12:8841000-8849400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr12:8841200-8844200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:8841200-8844400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr12:8841200-8844400	Weak transcription	Fetal Kidney	kidney
42	chr12:8841200-8844600	Weak transcription	Primary T cells from cord blood	blood
43	chr12:8841200-8844800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr12:8841200-8844800	Weak transcription	NHEK	skin
45	chr12:8841200-8845000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr12:8841200-8845000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr12:8841200-8845000	Weak transcription	Fetal Brain Male	brain
48	chr12:8841200-8845000	Weak transcription	Fetal Heart	heart
49	chr12:8841200-8845000	Weak transcription	Fetal Intestine Large	intestine
50	chr12:8841200-8845400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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