Variant report

Variant	rs10505736
Chromosome Location	chr12:8841834-8841835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:8839390..8841860-chr12:8849223..8851415,2	K562	blood:
2	chr12:8839319..8843626-chr12:8849447..8851652,4	MCF-7	breast:
3	chr12:8839497..8842147-chr12:8848896..8851394,3	MCF-7	breast:
4	chr12:8839195..8841980-chr12:8843895..8845777,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166532	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10082771	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10128818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10505735	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10770955	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10842109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10842130	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10842131	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046766	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11046806	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11046832	0.94[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046858	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11046872	1.00[ASN][1000 genomes]
rs11046887	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11046900	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11046949	0.83[CEU][hapmap]
rs11047042	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11047068	1.00[ASN][1000 genomes]
rs11612882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12296571	0.92[ASN][1000 genomes]
rs12296587	1.00[ASN][1000 genomes]
rs12296895	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12297409	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12297411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12299708	1.00[ASN][1000 genomes]
rs12300013	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12302099	1.00[JPT][hapmap]
rs12303273	1.00[JPT][hapmap]
rs12303275	0.92[ASN][1000 genomes]
rs12304092	1.00[ASN][1000 genomes]
rs12304853	1.00[ASN][1000 genomes]
rs12306245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12306562	1.00[ASN][1000 genomes]
rs12307610	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12309618	1.00[ASN][1000 genomes]
rs12311263	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12311861	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12312128	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12314360	1.00[JPT][hapmap]
rs12314822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12316311	1.00[ASN][1000 genomes]
rs12318215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1476902	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16917739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16917746	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2159889	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2302488	1.00[ASN][1000 genomes]
rs2377585	0.87[CEU][hapmap]
rs34187657	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35146959	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858672	1.00[ASN][1000 genomes]
rs56094803	1.00[ASN][1000 genomes]
rs56113263	1.00[ASN][1000 genomes]
rs56387756	1.00[ASN][1000 genomes]
rs56837371	1.00[ASN][1000 genomes]
rs56878267	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57676185	1.00[ASN][1000 genomes]
rs57747511	1.00[ASN][1000 genomes]
rs58333563	0.83[ASN][1000 genomes]
rs58451473	1.00[ASN][1000 genomes]
rs58503001	0.83[ASN][1000 genomes]
rs58544193	0.83[ASN][1000 genomes]
rs58612925	1.00[ASN][1000 genomes]
rs58732156	1.00[ASN][1000 genomes]
rs58863166	1.00[ASN][1000 genomes]
rs58866787	1.00[ASN][1000 genomes]
rs58998046	1.00[ASN][1000 genomes]
rs59235894	1.00[ASN][1000 genomes]
rs59306936	1.00[ASN][1000 genomes]
rs59449904	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59562279	1.00[ASN][1000 genomes]
rs59566766	1.00[ASN][1000 genomes]
rs59750351	1.00[ASN][1000 genomes]
rs59824700	1.00[ASN][1000 genomes]
rs59935835	1.00[ASN][1000 genomes]
rs60048072	1.00[ASN][1000 genomes]
rs60224353	1.00[ASN][1000 genomes]
rs60331702	1.00[ASN][1000 genomes]
rs60932450	1.00[ASN][1000 genomes]
rs61054720	1.00[ASN][1000 genomes]
rs61101189	1.00[ASN][1000 genomes]
rs61187268	1.00[ASN][1000 genomes]
rs61395640	1.00[ASN][1000 genomes]
rs61431903	1.00[ASN][1000 genomes]
rs61450603	1.00[ASN][1000 genomes]
rs6487313	1.00[JPT][hapmap]
rs6487333	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487347	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487353	1.00[ASN][1000 genomes]
rs6487354	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487361	1.00[ASN][1000 genomes]
rs7132012	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7136480	1.00[ASN][1000 genomes]
rs7139182	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7299203	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036906	1.00[ASN][1000 genomes]
rs7303757	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73053851	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73053860	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73053867	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7307494	1.00[ASN][1000 genomes]
rs7313569	1.00[ASN][1000 genomes]
rs7313580	1.00[ASN][1000 genomes]
rs7313614	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7316051	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs74059963	1.00[ASN][1000 genomes]
rs74059966	1.00[ASN][1000 genomes]
rs74059968	1.00[ASN][1000 genomes]
rs74059969	1.00[ASN][1000 genomes]
rs74059978	1.00[ASN][1000 genomes]
rs74059985	1.00[ASN][1000 genomes]
rs74059990	0.85[ASN][1000 genomes]
rs74059992	1.00[ASN][1000 genomes]
rs74061803	1.00[ASN][1000 genomes]
rs74061818	1.00[ASN][1000 genomes]
rs7954527	1.00[ASN][1000 genomes]
rs7955163	1.00[ASN][1000 genomes]
rs7960582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7961340	1.00[ASN][1000 genomes]
rs7964869	0.92[ASN][1000 genomes]
rs7968935	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7972763	1.00[ASN][1000 genomes]
rs7973476	1.00[ASN][1000 genomes]
rs7975293	1.00[ASN][1000 genomes]
rs7975977	1.00[ASN][1000 genomes]
rs7976729	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7977372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8821600-8845000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:8834800-8844800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:8834800-8848600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:8839200-8843200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr12:8839600-8842000	Enhancers	Rectal Smooth Muscle	rectum
6	chr12:8839600-8843200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr12:8840000-8843200	Enhancers	Fetal Stomach	stomach
8	chr12:8840200-8842800	Enhancers	Fetal Thymus	thymus
9	chr12:8840200-8843000	Enhancers	Adipose Nuclei	Adipose
10	chr12:8840200-8843200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:8840800-8842000	Weak transcription	Left Ventricle	heart
12	chr12:8840800-8842400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:8840800-8843200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:8840800-8845200	Weak transcription	Ovary	ovary
15	chr12:8840800-8849200	Weak transcription	Aorta	Aorta
16	chr12:8840800-8849600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:8841000-8842000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr12:8841000-8842000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:8841000-8842000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr12:8841000-8842000	Weak transcription	Brain Germinal Matrix	brain
21	chr12:8841000-8842200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr12:8841000-8842200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr12:8841000-8842200	Weak transcription	Brain Hippocampus Middle	brain
24	chr12:8841000-8842200	Weak transcription	Fetal Intestine Small	intestine
25	chr12:8841000-8842400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr12:8841000-8842400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr12:8841000-8842400	Weak transcription	Brain Substantia Nigra	brain
28	chr12:8841000-8842800	Enhancers	Brain Anterior Caudate	brain
29	chr12:8841000-8842800	Enhancers	Fetal Lung	lung
30	chr12:8841000-8843000	Enhancers	Colon Smooth Muscle	Colon
31	chr12:8841000-8843200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr12:8841000-8844400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr12:8841000-8844600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr12:8841000-8844800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr12:8841000-8844800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr12:8841000-8844800	Weak transcription	Thymus	Thymus
37	chr12:8841000-8844800	Weak transcription	HSMM	muscle
38	chr12:8841000-8845000	Weak transcription	Brain Angular Gyrus	brain
39	chr12:8841000-8845000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr12:8841000-8845000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr12:8841000-8845000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr12:8841000-8845000	Weak transcription	HSMMtube	muscle
43	chr12:8841000-8845200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr12:8841000-8845200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr12:8841000-8845200	Weak transcription	Placenta	Placenta
46	chr12:8841000-8845200	Weak transcription	HMEC	breast
47	chr12:8841000-8845200	Weak transcription	K562	blood
48	chr12:8841000-8845400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr12:8841000-8845600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr12:8841000-8848400	Genic enhancers	Hela-S3	cervix

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