Variant report

Variant	rs7139182
Chromosome Location	chr12:8920911-8920912
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8897099..8898698-chr12:8919700..8922096,2	MCF-7	breast:

Extended variants
information (count: 176 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10082771	1.00[ASN][1000 genomes]
rs10082851	1.00[EUR][1000 genomes]
rs10082862	1.00[EUR][1000 genomes]
rs10128818	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10129059	1.00[EUR][1000 genomes]
rs10505736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10842109	1.00[ASN][1000 genomes]
rs10842131	1.00[ASN][1000 genomes]
rs11046766	1.00[ASN][1000 genomes]
rs11046832	1.00[ASN][1000 genomes]
rs11046855	1.00[EUR][1000 genomes]
rs11046858	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11046861	1.00[EUR][1000 genomes]
rs11046868	1.00[EUR][1000 genomes]
rs11046869	1.00[EUR][1000 genomes]
rs11046872	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11046887	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11046888	1.00[EUR][1000 genomes]
rs11046896	1.00[EUR][1000 genomes]
rs11046898	1.00[EUR][1000 genomes]
rs11046899	1.00[EUR][1000 genomes]
rs11046900	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11046943	1.00[EUR][1000 genomes]
rs11047004	1.00[EUR][1000 genomes]
rs11047012	1.00[EUR][1000 genomes]
rs11047040	1.00[EUR][1000 genomes]
rs11047042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11047058	1.00[EUR][1000 genomes]
rs11047060	1.00[EUR][1000 genomes]
rs11047068	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11047080	1.00[EUR][1000 genomes]
rs11047108	1.00[EUR][1000 genomes]
rs11047109	1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs11612882	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11616092	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12099874	1.00[EUR][1000 genomes]
rs12296102	1.00[EUR][1000 genomes]
rs12296571	0.92[ASN][1000 genomes]
rs12296587	1.00[ASN][1000 genomes]
rs12296895	1.00[ASN][1000 genomes]
rs12297411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297919	1.00[EUR][1000 genomes]
rs12298316	1.00[EUR][1000 genomes]
rs12299388	1.00[EUR][1000 genomes]
rs12299708	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12300013	1.00[ASN][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12302099	1.00[JPT][hapmap]
rs12303273	1.00[JPT][hapmap]
rs12303275	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12304092	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12304853	1.00[ASN][1000 genomes]
rs12306245	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12306562	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12307497	1.00[EUR][1000 genomes]
rs12307610	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12309618	0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12311048	1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12311263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12311861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12312128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12312707	1.00[EUR][1000 genomes]
rs12314072	1.00[EUR][1000 genomes]
rs12314360	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs12314822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12314823	1.00[EUR][1000 genomes]
rs12315566	1.00[EUR][1000 genomes]
rs12316311	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12318215	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12318911	1.00[EUR][1000 genomes]
rs12319105	1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320520	1.00[EUR][1000 genomes]
rs12320578	1.00[EUR][1000 genomes]
rs12321251	1.00[EUR][1000 genomes]
rs12322748	1.00[EUR][1000 genomes]
rs1476902	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16917739	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16917746	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2159889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs2302488	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28651596	1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs35146959	1.00[ASN][1000 genomes]
rs3858672	1.00[ASN][1000 genomes]
rs56094803	1.00[ASN][1000 genomes]
rs56113263	1.00[ASN][1000 genomes]
rs56387756	1.00[ASN][1000 genomes]
rs56837371	1.00[ASN][1000 genomes]
rs56878267	1.00[ASN][1000 genomes]
rs57676185	1.00[ASN][1000 genomes]
rs57747511	1.00[ASN][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	1.00[EUR][1000 genomes]
rs58333563	0.83[ASN][1000 genomes]
rs58451473	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58503001	0.83[ASN][1000 genomes]
rs58544193	0.83[ASN][1000 genomes]
rs58612925	1.00[ASN][1000 genomes]
rs58704538	1.00[EUR][1000 genomes]
rs58732156	1.00[ASN][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs58863166	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58866787	1.00[ASN][1000 genomes]
rs58998046	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59235894	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59306936	1.00[ASN][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59562279	1.00[ASN][1000 genomes]
rs59566766	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59705800	1.00[EUR][1000 genomes]
rs59750351	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59824700	1.00[ASN][1000 genomes]
rs59935835	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60048072	1.00[ASN][1000 genomes]
rs60224353	1.00[ASN][1000 genomes]
rs60331702	1.00[ASN][1000 genomes]
rs60389926	1.00[EUR][1000 genomes]
rs60467762	1.00[EUR][1000 genomes]
rs60925344	1.00[EUR][1000 genomes]
rs60932450	1.00[ASN][1000 genomes]
rs61054720	1.00[ASN][1000 genomes]
rs61101189	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61187268	1.00[ASN][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs61395640	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61431903	1.00[ASN][1000 genomes]
rs61450603	1.00[ASN][1000 genomes]
rs6487313	1.00[JPT][hapmap]
rs6487333	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6487353	1.00[ASN][1000 genomes]
rs6487354	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6487361	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7132012	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7136480	1.00[ASN][1000 genomes]
rs7299203	1.00[ASN][1000 genomes]
rs73036906	1.00[ASN][1000 genomes]
rs7303757	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7307494	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7313569	0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7313580	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7313614	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7316051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74059963	1.00[ASN][1000 genomes]
rs74059966	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74059968	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74059969	1.00[ASN][1000 genomes]
rs74059978	1.00[ASN][1000 genomes]
rs74059985	1.00[ASN][1000 genomes]
rs74059990	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs74059992	1.00[ASN][1000 genomes]
rs74061803	1.00[ASN][1000 genomes]
rs74061818	1.00[ASN][1000 genomes]
rs7953439	1.00[EUR][1000 genomes]
rs7953800	1.00[EUR][1000 genomes]
rs7954527	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7955163	0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs7960582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7961340	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7964869	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7968935	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7972763	1.00[ASN][1000 genomes]
rs7973476	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7975293	1.00[ASN][1000 genomes]
rs7975977	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7977372	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	1.00[EUR][1000 genomes]
rs9783460	1.00[EUR][1000 genomes]
rs9783480	1.00[EUR][1000 genomes]
rs9783524	1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7139182	CD2	trans	lymphoblastoid	seeQTL

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8853200-8934000	Weak transcription	K562	blood
2	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
3	chr12:8878400-8923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:8882200-8938400	Weak transcription	Spleen	Spleen
6	chr12:8882200-8939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:8883400-8938800	Weak transcription	Primary B cells from cord blood	blood
8	chr12:8888800-8932000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:8889200-8935800	Weak transcription	A549	lung
10	chr12:8889200-8936600	Weak transcription	Brain Angular Gyrus	brain
11	chr12:8890600-8937000	Weak transcription	Colon Smooth Muscle	Colon
12	chr12:8894200-8937800	Weak transcription	Esophagus	oesophagus
13	chr12:8895400-8923200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr12:8895400-8927600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:8895600-8935200	Weak transcription	HMEC	breast
16	chr12:8895600-8937800	Weak transcription	HSMMtube	muscle
17	chr12:8895600-8941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr12:8897000-8931400	Weak transcription	Brain Anterior Caudate	brain
19	chr12:8899400-8941200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr12:8902200-8923400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr12:8903000-8941200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr12:8904600-8932000	Weak transcription	Gastric	stomach
23	chr12:8904600-8933200	Weak transcription	Fetal Brain Male	brain
24	chr12:8905000-8938400	Weak transcription	Pancreas	Pancrea
25	chr12:8905800-8941200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr12:8906000-8941200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr12:8906200-8926000	Weak transcription	Right Ventricle	heart
28	chr12:8906400-8937400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr12:8906800-8925200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr12:8906800-8941200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr12:8907000-8935600	Weak transcription	HSMM	muscle
32	chr12:8907000-8935600	Weak transcription	Osteobl	bone
33	chr12:8907000-8938200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr12:8907200-8928000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr12:8907200-8934000	Weak transcription	Brain Substantia Nigra	brain
36	chr12:8907200-8936000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr12:8907200-8937600	Weak transcription	NH-A	brain
38	chr12:8907400-8928600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:8907400-8930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr12:8907600-8922200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr12:8907600-8925200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr12:8908200-8930000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr12:8908400-8925000	Weak transcription	Left Ventricle	heart
44	chr12:8908400-8925800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr12:8908600-8925800	Weak transcription	Fetal Lung	lung
46	chr12:8908600-8931800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr12:8908600-8932000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr12:8908600-8941000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr12:8908600-8941200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr12:8908600-8941200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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