Variant report

Variant	rs10082862
Chromosome Location	chr12:8836437-8836438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10082851	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	1.00[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[EUR][1000 genomes]
rs12309620	1.00[AMR][1000 genomes]
rs12311048	1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[EUR][1000 genomes]
rs12314072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[EUR][1000 genomes]
rs9783480	1.00[EUR][1000 genomes]
rs9783524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8821600-8845000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:8828400-8840400	Weak transcription	Brain Anterior Caudate	brain
3	chr12:8828800-8837200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:8830000-8840400	Weak transcription	Primary T cells from cord blood	blood
5	chr12:8833800-8836800	Active TSS	Hela-S3	cervix
6	chr12:8834600-8839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:8834600-8840000	Weak transcription	Fetal Lung	lung
8	chr12:8834600-8840200	Weak transcription	HSMMtube	muscle
9	chr12:8834600-8840400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:8834600-8840600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:8834800-8838600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr12:8834800-8839800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr12:8834800-8840000	Weak transcription	NH-A	brain
14	chr12:8834800-8840400	Weak transcription	HSMM	muscle
15	chr12:8834800-8844800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr12:8834800-8848600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:8835000-8839600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr12:8835000-8839600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:8835000-8839600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:8835000-8839800	Weak transcription	Colon Smooth Muscle	Colon
21	chr12:8835000-8840000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr12:8835000-8840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:8835000-8840000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr12:8835000-8840000	Weak transcription	Fetal Kidney	kidney
25	chr12:8835000-8840000	Weak transcription	Osteobl	bone
26	chr12:8835000-8840400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr12:8835200-8839400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr12:8835200-8839600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr12:8835200-8839600	Weak transcription	HUVEC	blood vessel
30	chr12:8835800-8840400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr12:8836000-8839400	Weak transcription	NHEK	skin
32	chr12:8836000-8840200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr12:8836200-8837000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr12:8836200-8837200	Weak transcription	Placenta	Placenta

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