Variant report

Variant	rs12312707
Chromosome Location	chr12:8924052-8924053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10082851	1.00[EUR][1000 genomes]
rs10082862	1.00[EUR][1000 genomes]
rs10129059	1.00[EUR][1000 genomes]
rs11046855	1.00[EUR][1000 genomes]
rs11046861	1.00[EUR][1000 genomes]
rs11046868	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11046869	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11046888	1.00[EUR][1000 genomes]
rs11046896	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11046898	1.00[EUR][1000 genomes]
rs11046899	1.00[EUR][1000 genomes]
rs11046943	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11047039	0.92[AFR][1000 genomes]
rs11047040	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs11047080	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	1.00[EUR][1000 genomes]
rs11047617	1.00[MEX][hapmap]
rs11047620	1.00[MEX][hapmap]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	1.00[EUR][1000 genomes]
rs12298316	1.00[EUR][1000 genomes]
rs12299388	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311048	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12314072	1.00[EUR][1000 genomes]
rs12314823	1.00[EUR][1000 genomes]
rs12315566	1.00[EUR][1000 genomes]
rs12318911	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12319105	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320520	1.00[EUR][1000 genomes]
rs12320578	1.00[EUR][1000 genomes]
rs12321251	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12322748	1.00[EUR][1000 genomes]
rs13378100	1.00[MEX][hapmap]
rs28651596	1.00[EUR][1000 genomes]
rs28812300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57750938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58191549	1.00[EUR][1000 genomes]
rs58704538	1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	1.00[EUR][1000 genomes]
rs60389926	1.00[EUR][1000 genomes]
rs60467762	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs7953624	1.00[MEX][hapmap]
rs7953800	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783480	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783524	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8853200-8934000	Weak transcription	K562	blood
2	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
3	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr12:8882200-8938400	Weak transcription	Spleen	Spleen
5	chr12:8882200-8939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:8883400-8938800	Weak transcription	Primary B cells from cord blood	blood
7	chr12:8888800-8932000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr12:8889200-8935800	Weak transcription	A549	lung
9	chr12:8889200-8936600	Weak transcription	Brain Angular Gyrus	brain
10	chr12:8890600-8937000	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:8894200-8937800	Weak transcription	Esophagus	oesophagus
12	chr12:8895400-8927600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr12:8895600-8935200	Weak transcription	HMEC	breast
14	chr12:8895600-8937800	Weak transcription	HSMMtube	muscle
15	chr12:8895600-8941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr12:8897000-8931400	Weak transcription	Brain Anterior Caudate	brain
17	chr12:8899400-8941200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr12:8903000-8941200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr12:8904600-8932000	Weak transcription	Gastric	stomach
20	chr12:8904600-8933200	Weak transcription	Fetal Brain Male	brain
21	chr12:8905000-8938400	Weak transcription	Pancreas	Pancrea
22	chr12:8905800-8941200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr12:8906000-8941200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr12:8906200-8926000	Weak transcription	Right Ventricle	heart
25	chr12:8906400-8937400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr12:8906800-8925200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr12:8906800-8941200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr12:8907000-8935600	Weak transcription	HSMM	muscle
29	chr12:8907000-8935600	Weak transcription	Osteobl	bone
30	chr12:8907000-8938200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr12:8907200-8928000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr12:8907200-8934000	Weak transcription	Brain Substantia Nigra	brain
33	chr12:8907200-8936000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr12:8907200-8937600	Weak transcription	NH-A	brain
35	chr12:8907400-8928600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr12:8907400-8930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr12:8907600-8925200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr12:8908200-8930000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr12:8908400-8925000	Weak transcription	Left Ventricle	heart
40	chr12:8908400-8925800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr12:8908600-8925800	Weak transcription	Fetal Lung	lung
42	chr12:8908600-8931800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr12:8908600-8932000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr12:8908600-8941000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr12:8908600-8941200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr12:8908600-8941200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr12:8909800-8936400	Weak transcription	Brain Hippocampus Middle	brain
48	chr12:8910000-8925200	Weak transcription	Fetal Intestine Large	intestine
49	chr12:8910600-8925000	Weak transcription	Adipose Nuclei	Adipose
50	chr12:8910600-8925000	Weak transcription	HUVEC	blood vessel

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