Variant report

Variant	rs13378100
Chromosome Location	chr12:8804137-8804138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:8804059-8804427	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
MFAP5	TF binding region

rs_ID	r²[population]
rs11047080	1.00[MEX][hapmap]
rs12306895	0.84[AFR][1000 genomes]
rs12312707	1.00[MEX][hapmap]
rs12322052	1.00[EUR][1000 genomes]
rs56776129	1.00[EUR][1000 genomes]
rs7953624	0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[EUR][1000 genomes]
rs7963296	1.00[MEX][hapmap]
rs7972013	1.00[MEX][hapmap]
rs9783460	1.00[MEX][hapmap]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8789600-8813400	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:8792600-8808000	Weak transcription	Hela-S3	cervix
3	chr12:8792600-8814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:8795000-8808400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:8797600-8808800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:8798000-8810400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:8798400-8810000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:8798600-8808400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:8799200-8813600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr12:8799800-8810400	Weak transcription	NH-A	brain
11	chr12:8800000-8804800	Strong transcription	Placenta	Placenta
12	chr12:8800000-8808400	Strong transcription	HSMM	muscle
13	chr12:8800200-8808600	Strong transcription	HSMMtube	muscle
14	chr12:8801200-8810600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr12:8801400-8808200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr12:8801600-8809800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr12:8802000-8806600	Weak transcription	Adipose Nuclei	Adipose
18	chr12:8802200-8807000	Weak transcription	Fetal Thymus	thymus
19	chr12:8802400-8810600	Weak transcription	NHDF-Ad	bronchial
20	chr12:8803200-8805400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:8803200-8807000	Weak transcription	NHEK	skin
22	chr12:8804000-8804200	Enhancers	GM12878-XiMat	blood

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