Variant report

Variant	rs12306895
Chromosome Location	chr12:8795092-8795093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11832680	1.00[EUR][1000 genomes]
rs12322052	1.00[AMR][1000 genomes]
rs13378100	0.84[AFR][1000 genomes]
rs73242785	1.00[EUR][1000 genomes]
rs73242788	1.00[EUR][1000 genomes]
rs73242789	1.00[EUR][1000 genomes]
rs7953624	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048336	chr12:8663355-8797018	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8783000-8797600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:8783400-8797200	Weak transcription	HSMMtube	muscle
3	chr12:8788000-8798600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:8789600-8813400	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:8790600-8797400	Weak transcription	NHEK	skin
6	chr12:8792200-8797600	Weak transcription	Gastric	stomach
7	chr12:8792400-8800600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:8792400-8801200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:8792600-8797600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:8792600-8800000	Weak transcription	Placenta	Placenta
11	chr12:8792600-8808000	Weak transcription	Hela-S3	cervix
12	chr12:8792600-8814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:8792800-8797200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:8792800-8797400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:8793000-8796000	Weak transcription	Thymus	Thymus
16	chr12:8793000-8796200	Weak transcription	Fetal Thymus	thymus
17	chr12:8793000-8797400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:8793000-8800600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:8793800-8795400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:8794800-8795400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr12:8795000-8808400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links