Variant report

Variant	rs11047080
Chromosome Location	chr12:8907196-8907197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10082851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047039	0.92[AFR][1000 genomes]
rs11047040	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047617	1.00[MEX][hapmap]
rs11047620	1.00[MEX][hapmap]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	1.00[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12309620	1.00[AMR][1000 genomes]
rs12311048	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12314072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12320520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13378100	1.00[MEX][hapmap]
rs1805757	1.00[TSI][hapmap]
rs28651596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57750938	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58191549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953624	1.00[MEX][hapmap]
rs7953800	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783480	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:8853200-8934000	Weak transcription	K562	blood
3	chr12:8862800-8908000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
5	chr12:8878400-8923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:8882200-8938400	Weak transcription	Spleen	Spleen
8	chr12:8882200-8939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:8883400-8938800	Weak transcription	Primary B cells from cord blood	blood
10	chr12:8886600-8912200	Weak transcription	Small Intestine	intestine
11	chr12:8888800-8932000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr12:8889200-8917400	Weak transcription	Fetal Heart	heart
13	chr12:8889200-8935800	Weak transcription	A549	lung
14	chr12:8889200-8936600	Weak transcription	Brain Angular Gyrus	brain
15	chr12:8890400-8911000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:8890600-8937000	Weak transcription	Colon Smooth Muscle	Colon
17	chr12:8893800-8911000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:8894200-8937800	Weak transcription	Esophagus	oesophagus
19	chr12:8894400-8907200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr12:8894400-8920800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:8895400-8923200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr12:8895400-8927600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr12:8895600-8909000	Weak transcription	NHDF-Ad	bronchial
24	chr12:8895600-8911200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr12:8895600-8935200	Weak transcription	HMEC	breast
26	chr12:8895600-8937800	Weak transcription	HSMMtube	muscle
27	chr12:8895600-8941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:8896000-8908000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr12:8897000-8908000	Weak transcription	Brain Hippocampus Middle	brain
30	chr12:8897000-8931400	Weak transcription	Brain Anterior Caudate	brain
31	chr12:8899200-8912400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:8899400-8941200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr12:8901000-8912400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr12:8901400-8912400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr12:8901400-8913200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:8901600-8908400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr12:8901800-8908400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr12:8902000-8910000	Strong transcription	Fetal Muscle Trunk	muscle
39	chr12:8902000-8912400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr12:8902000-8912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr12:8902200-8907200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr12:8902200-8923400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr12:8902400-8910800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr12:8902400-8911400	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr12:8902400-8911800	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr12:8902400-8911800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr12:8902400-8912400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr12:8902400-8912400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr12:8902400-8912400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr12:8902400-8912400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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