Variant report

Variant	rs11047039
Chromosome Location	chr12:8899634-8899635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11047004	0.88[AFR][1000 genomes]
rs11047012	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11047040	0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs11047058	0.92[AFR][1000 genomes]
rs11047080	0.92[AFR][1000 genomes]
rs11047108	0.92[AFR][1000 genomes]
rs12307497	0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs12312707	0.92[AFR][1000 genomes]
rs12319898	0.92[AFR][1000 genomes]
rs12321251	0.85[YRI][hapmap]
rs28812300	0.92[AFR][1000 genomes]
rs57750938	0.92[AFR][1000 genomes]
rs59291561	0.92[AFR][1000 genomes]
rs60467762	0.83[AFR][1000 genomes]
rs60925344	0.92[AFR][1000 genomes]
rs61368791	0.92[AFR][1000 genomes]
rs9783460	0.88[AFR][1000 genomes]
rs9783480	0.88[AFR][1000 genomes]
rs9783524	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3508325	chr12:8892485-8900283	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3508323	chr12:8893035-8900233	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:8853200-8934000	Weak transcription	K562	blood
3	chr12:8862400-8902400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:8862800-8905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:8862800-8908000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:8868200-8905400	Weak transcription	Right Ventricle	heart
7	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
8	chr12:8877600-8902600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr12:8877800-8904000	Weak transcription	Fetal Brain Male	brain
10	chr12:8878400-8904400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:8878400-8923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr12:8879800-8902400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:8882200-8902400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:8882200-8904800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:8882200-8938400	Weak transcription	Spleen	Spleen
17	chr12:8882200-8939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr12:8882400-8902600	Weak transcription	Fetal Lung	lung
19	chr12:8882400-8904200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr12:8882400-8905800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr12:8882600-8903400	Weak transcription	Primary T cells from cord blood	blood
22	chr12:8883200-8903800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr12:8883200-8904600	Weak transcription	Fetal Brain Female	brain
24	chr12:8883400-8938800	Weak transcription	Primary B cells from cord blood	blood
25	chr12:8886600-8912200	Weak transcription	Small Intestine	intestine
26	chr12:8888800-8932000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr12:8889200-8917400	Weak transcription	Fetal Heart	heart
28	chr12:8889200-8935800	Weak transcription	A549	lung
29	chr12:8889200-8936600	Weak transcription	Brain Angular Gyrus	brain
30	chr12:8889600-8903200	Weak transcription	Ovary	ovary
31	chr12:8890400-8911000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr12:8890600-8937000	Weak transcription	Colon Smooth Muscle	Colon
33	chr12:8892800-8902200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr12:8892800-8902200	Weak transcription	Fetal Muscle Leg	muscle
35	chr12:8893000-8901200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr12:8893200-8902600	Weak transcription	Fetal Thymus	thymus
37	chr12:8893400-8902600	Weak transcription	Placenta	Placenta
38	chr12:8893600-8901400	Weak transcription	Fetal Intestine Small	intestine
39	chr12:8893600-8905000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr12:8893800-8911000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr12:8894200-8937800	Weak transcription	Esophagus	oesophagus
42	chr12:8894400-8907200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr12:8894400-8920800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:8895400-8905400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr12:8895400-8923200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr12:8895400-8927600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr12:8895600-8899800	Weak transcription	NHEK	skin
48	chr12:8895600-8902400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr12:8895600-8902400	Weak transcription	Dnd41	blood
50	chr12:8895600-8902600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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