Variant report

Variant	rs12321251
Chromosome Location	chr12:8871953-8871954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:8849908..8851880-chr12:8870229..8872917,2	K562	blood:
2	chr12:8849017..8851561-chr12:8871005..8872532,2	MCF-7	breast:
3	chr12:8866141..8867803-chr12:8869276..8872197,2	K562	blood:
4	chr12:8865412..8867803-chr12:8870697..8872686,2	K562	blood:

Variant related genes	Relation type
ENSG00000166532	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10082851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047039	0.85[YRI][hapmap]
rs11047040	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	1.00[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12309620	1.00[AMR][1000 genomes]
rs12311048	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12314072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315165	0.82[YRI][hapmap]
rs12315566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320520	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7976729	0.86[YRI][hapmap]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9783480	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9783524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8851800-8873200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr12:8851800-8877200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:8852600-8874600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:8852600-8880000	Weak transcription	HMEC	breast
5	chr12:8852800-8877200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr12:8853000-8873200	Weak transcription	A549	lung
8	chr12:8853000-8875600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:8853200-8872400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:8853200-8934000	Weak transcription	K562	blood
11	chr12:8855600-8875200	Weak transcription	Fetal Kidney	kidney
12	chr12:8860000-8876400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:8860000-8881600	Weak transcription	Spleen	Spleen
14	chr12:8862200-8880000	Weak transcription	Pancreas	Pancrea
15	chr12:8862400-8872400	Weak transcription	Thymus	Thymus
16	chr12:8862400-8875200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr12:8862400-8875200	Weak transcription	Colon Smooth Muscle	Colon
18	chr12:8862400-8877200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:8862400-8880000	Weak transcription	Esophagus	oesophagus
20	chr12:8862400-8894800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr12:8862400-8895000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr12:8862400-8902400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr12:8862600-8875000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr12:8862600-8879000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr12:8862600-8894800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr12:8862800-8875600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr12:8862800-8879600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr12:8862800-8880200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr12:8862800-8881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr12:8862800-8905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr12:8862800-8908000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr12:8863800-8876400	Weak transcription	Fetal Stomach	stomach
33	chr12:8864000-8876400	Weak transcription	Fetal Intestine Small	intestine
34	chr12:8864000-8877800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr12:8864600-8872400	Weak transcription	NH-A	brain
36	chr12:8864800-8875200	Weak transcription	Fetal Heart	heart
37	chr12:8865000-8895200	Weak transcription	Psoas Muscle	Psoas
38	chr12:8865400-8873200	Weak transcription	Left Ventricle	heart
39	chr12:8865400-8873600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr12:8865400-8873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr12:8865400-8877200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr12:8865400-8877200	Weak transcription	Lung	lung
43	chr12:8865400-8877200	Weak transcription	Ovary	ovary
44	chr12:8865400-8877200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr12:8865400-8878600	Weak transcription	Gastric	stomach
46	chr12:8865600-8877200	Weak transcription	Brain Substantia Nigra	brain
47	chr12:8865600-8887600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr12:8865800-8888600	Weak transcription	Brain Anterior Caudate	brain
49	chr12:8866000-8875600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr12:8866000-8880000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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