Variant report

Variant	rs12099874
Chromosome Location	chr12:8881507-8881508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10082851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12296102	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	1.00[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12309620	1.00[AMR][1000 genomes]
rs12311048	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12314072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12320520	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57750938	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58191549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783480	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783524	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:8853200-8934000	Weak transcription	K562	blood
3	chr12:8860000-8881600	Weak transcription	Spleen	Spleen
4	chr12:8862400-8894800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:8862400-8895000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:8862400-8902400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:8862600-8894800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:8862800-8881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr12:8862800-8905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr12:8862800-8908000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr12:8865000-8895200	Weak transcription	Psoas Muscle	Psoas
12	chr12:8865600-8887600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr12:8865800-8888600	Weak transcription	Brain Anterior Caudate	brain
14	chr12:8866000-8895000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr12:8866000-8896600	Weak transcription	Brain Hippocampus Middle	brain
16	chr12:8867200-8883600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr12:8868200-8881600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:8868200-8905400	Weak transcription	Right Ventricle	heart
19	chr12:8868800-8892800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr12:8870400-8881600	Strong transcription	Fetal Muscle Leg	muscle
21	chr12:8870600-8883600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr12:8872000-8896600	Weak transcription	HUVEC	blood vessel
23	chr12:8874200-8888200	Weak transcription	NHEK	skin
24	chr12:8874200-8894800	Weak transcription	HSMM	muscle
25	chr12:8874400-8885400	Weak transcription	NH-A	brain
26	chr12:8874400-8888600	Weak transcription	A549	lung
27	chr12:8874400-8892000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr12:8875400-8881600	Weak transcription	Primary B cells from cord blood	blood
29	chr12:8875400-8884000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr12:8875600-8894800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:8875600-8895000	Weak transcription	HSMMtube	muscle
32	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
33	chr12:8876000-8887600	Weak transcription	Colon Smooth Muscle	Colon
34	chr12:8876200-8887200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr12:8876200-8887600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr12:8876800-8881600	Strong transcription	Dnd41	blood
37	chr12:8877400-8882800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr12:8877400-8887800	Weak transcription	Brain Substantia Nigra	brain
39	chr12:8877600-8888400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr12:8877600-8902600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr12:8877800-8894800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr12:8877800-8904000	Weak transcription	Fetal Brain Male	brain
43	chr12:8878400-8881600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr12:8878400-8904400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr12:8878400-8923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr12:8878800-8881600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr12:8878800-8881600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr12:8878800-8881600	Weak transcription	Adipose Nuclei	Adipose
50	chr12:8878800-8887800	Weak transcription	Left Ventricle	heart

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