Variant report

Variant	rs60389926
Chromosome Location	chr12:8832692-8832693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8831240..8834725-chr12:9101135..9103936,3	MCF-7	breast:
2	chr12:8832360..8833354-chr12:9043185..9043776,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139187	Chromatin interaction
ENSG00000003056	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10082851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	1.00[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[EUR][1000 genomes]
rs12309620	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12311048	1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[EUR][1000 genomes]
rs12314072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[EUR][1000 genomes]
rs9783480	1.00[EUR][1000 genomes]
rs9783524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8821600-8845000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:8824000-8833600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:8828000-8833400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:8828400-8833800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:8828400-8840400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:8828600-8834000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:8828800-8833600	Weak transcription	Fetal Intestine Small	intestine
8	chr12:8828800-8833800	Weak transcription	Fetal Kidney	kidney
9	chr12:8828800-8837200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:8829400-8834000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:8829600-8834800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:8830000-8833800	Weak transcription	Fetal Thymus	thymus
13	chr12:8830000-8834000	Weak transcription	Right Atrium	heart
14	chr12:8830000-8834200	Enhancers	Placenta	Placenta
15	chr12:8830000-8840400	Weak transcription	Primary T cells from cord blood	blood
16	chr12:8830200-8833800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr12:8830800-8833800	Enhancers	NHEK	skin
18	chr12:8830800-8834000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr12:8831000-8832800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:8831000-8834600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:8831200-8833200	Enhancers	Hela-S3	cervix
22	chr12:8831200-8833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:8831400-8833600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr12:8831400-8834200	Enhancers	HMEC	breast
25	chr12:8831600-8833200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr12:8831800-8833600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr12:8831800-8833600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:8832200-8834000	Weak transcription	HSMMtube	muscle
29	chr12:8832400-8833400	Weak transcription	NH-A	brain
30	chr12:8832400-8833600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr12:8832400-8834200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr12:8832600-8832800	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr12:8832600-8833800	Enhancers	HUVEC	blood vessel

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