Variant report

Variant	rs11046869
Chromosome Location	chr12:8858449-8858450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8849902..8852350-chr12:8858343..8860911,2	MCF-7	breast:
2	chr12:8849809..8853868-chr12:8853971..8860490,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166532	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10082851	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296587	0.83[AMR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	0.83[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12309620	0.83[AMR][1000 genomes]
rs12311048	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12314072	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs12320520	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9783480	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9783524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8851400-8862000	Weak transcription	Gastric	stomach
2	chr12:8851600-8862000	Weak transcription	Lung	lung
3	chr12:8851800-8859800	Weak transcription	Spleen	Spleen
4	chr12:8851800-8862000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:8851800-8862000	Weak transcription	Left Ventricle	heart
6	chr12:8851800-8862000	Weak transcription	HSMM	muscle
7	chr12:8851800-8862000	Weak transcription	HSMMtube	muscle
8	chr12:8851800-8863400	Weak transcription	Right Ventricle	heart
9	chr12:8851800-8873200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr12:8851800-8877200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:8852000-8861800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:8852400-8859600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:8852600-8862000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:8852600-8874600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr12:8852600-8880000	Weak transcription	HMEC	breast
16	chr12:8852800-8859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr12:8852800-8863800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:8852800-8864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:8852800-8871400	Weak transcription	Fetal Intestine Large	intestine
20	chr12:8852800-8877200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr12:8853000-8862000	Weak transcription	Primary T cells from cord blood	blood
23	chr12:8853000-8871800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr12:8853000-8873200	Weak transcription	A549	lung
25	chr12:8853000-8875600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:8853200-8859800	Weak transcription	Fetal Intestine Small	intestine
27	chr12:8853200-8861200	Weak transcription	HUVEC	blood vessel
28	chr12:8853200-8861200	Weak transcription	Osteobl	bone
29	chr12:8853200-8861600	Weak transcription	NHDF-Ad	bronchial
30	chr12:8853200-8862000	Weak transcription	Fetal Thymus	thymus
31	chr12:8853200-8862000	Weak transcription	Psoas Muscle	Psoas
32	chr12:8853200-8868400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr12:8853200-8872400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr12:8853200-8934000	Weak transcription	K562	blood
35	chr12:8853400-8859400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr12:8853400-8859600	Weak transcription	Fetal Stomach	stomach
37	chr12:8853400-8859600	Weak transcription	Dnd41	blood
38	chr12:8853400-8859800	Weak transcription	Placenta	Placenta
39	chr12:8853400-8866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr12:8853400-8866400	Weak transcription	NHEK	skin
41	chr12:8853600-8861200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr12:8853600-8862000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr12:8853600-8862000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr12:8853600-8862000	Weak transcription	Right Atrium	heart
45	chr12:8853800-8859600	Weak transcription	Fetal Muscle Leg	muscle
46	chr12:8853800-8862000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr12:8854000-8859800	Weak transcription	Brain Anterior Caudate	brain
48	chr12:8854000-8866200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr12:8854200-8861000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:8854200-8861400	Weak transcription	Primary hematopoietic stem cells	blood

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