Variant report

Variant	rs12314072
Chromosome Location	chr12:8862634-8862635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8853948..8856246-chr12:8860962..8863055,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10082851	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296587	0.83[AMR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	0.83[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[EUR][1000 genomes]
rs12309620	0.83[AMR][1000 genomes]
rs12311048	1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[EUR][1000 genomes]
rs12314823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320520	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	0.83[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[EUR][1000 genomes]
rs9783480	1.00[EUR][1000 genomes]
rs9783524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8851800-8863400	Weak transcription	Right Ventricle	heart
2	chr12:8851800-8873200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:8851800-8877200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:8852600-8874600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:8852600-8880000	Weak transcription	HMEC	breast
6	chr12:8852800-8863800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:8852800-8864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:8852800-8871400	Weak transcription	Fetal Intestine Large	intestine
9	chr12:8852800-8877200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr12:8853000-8871800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:8853000-8873200	Weak transcription	A549	lung
13	chr12:8853000-8875600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr12:8853200-8868400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:8853200-8872400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr12:8853200-8934000	Weak transcription	K562	blood
17	chr12:8853400-8866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:8853400-8866400	Weak transcription	NHEK	skin
19	chr12:8854000-8866200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr12:8855000-8870200	Weak transcription	Fetal Brain Male	brain
21	chr12:8855200-8868000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr12:8855600-8867800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr12:8855600-8875200	Weak transcription	Fetal Kidney	kidney
24	chr12:8856400-8866200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr12:8859800-8863800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr12:8860000-8876400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr12:8860000-8881600	Weak transcription	Spleen	Spleen
28	chr12:8860200-8866000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:8860200-8868000	Weak transcription	Fetal Brain Female	brain
30	chr12:8861200-8862800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr12:8861200-8862800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:8861400-8862800	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr12:8861600-8862800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:8861600-8862800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr12:8861600-8863400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
36	chr12:8861800-8862800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr12:8861800-8862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr12:8861800-8863600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr12:8862000-8862800	Enhancers	Primary B cells from peripheral blood	blood
40	chr12:8862000-8862800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr12:8862000-8862800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr12:8862000-8862800	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr12:8862000-8863000	Enhancers	Fetal Thymus	thymus
44	chr12:8862000-8863400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr12:8862000-8865400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr12:8862200-8863400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr12:8862200-8863400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr12:8862200-8863800	Strong transcription	Fetal Stomach	stomach
49	chr12:8862200-8864000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr12:8862200-8864000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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