Variant report

Variant	rs10129059
Chromosome Location	chr12:8834788-8834789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:8834350..8835349-chr12:9042854..9043829,4	K562	blood:
2	chr12:8834420..8835323-chr12:8975645..8976922,6	K562	blood:
3	chr12:8834370..8834975-chr12:9013092..9013685,2	MCF-7	breast:
4	chr12:8832727..8836231-chr12:8849066..8853020,4	MCF-7	breast:
5	chr12:8834406..8835314-chr12:9201831..9202872,3	K562	blood:

Variant related genes	Relation type
ENSG00000166535	Chromatin interaction
ENSG00000166532	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10082851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	1.00[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[EUR][1000 genomes]
rs12309620	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12311048	1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[EUR][1000 genomes]
rs12314072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[EUR][1000 genomes]
rs9783480	1.00[EUR][1000 genomes]
rs9783524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8821600-8845000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:8828400-8840400	Weak transcription	Brain Anterior Caudate	brain
3	chr12:8828800-8837200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:8829600-8834800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:8830000-8840400	Weak transcription	Primary T cells from cord blood	blood
6	chr12:8833200-8834800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:8833200-8835000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:8833200-8835000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr12:8833400-8834800	Enhancers	NH-A	brain
10	chr12:8833600-8834800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr12:8833600-8834800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr12:8833600-8834800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr12:8833600-8835000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr12:8833600-8835000	Enhancers	Osteobl	bone
15	chr12:8833800-8834800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:8833800-8834800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr12:8833800-8834800	Flanking Active TSS	NHEK	skin
18	chr12:8833800-8835000	Enhancers	Colon Smooth Muscle	Colon
19	chr12:8833800-8835000	Enhancers	Fetal Kidney	kidney
20	chr12:8833800-8835000	Flanking Active TSS	HUVEC	blood vessel
21	chr12:8833800-8836000	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr12:8833800-8836800	Active TSS	Hela-S3	cervix
23	chr12:8834000-8834800	Active TSS	H9 Cell Line	embryonic stem cell
24	chr12:8834000-8834800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr12:8834000-8834800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:8834000-8834800	Enhancers	A549	lung
27	chr12:8834000-8834800	Enhancers	HSMM	muscle
28	chr12:8834000-8835000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr12:8834200-8834800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr12:8834200-8834800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr12:8834200-8834800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr12:8834200-8834800	Flanking Active TSS	HMEC	breast
33	chr12:8834200-8835000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr12:8834200-8835200	Active TSS	Right Atrium	heart
35	chr12:8834200-8835800	Active TSS	Adipose Nuclei	Adipose
36	chr12:8834400-8834800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:8834400-8835000	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr12:8834400-8835000	Enhancers	Duodenum Mucosa	Duodenum
39	chr12:8834400-8836000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr12:8834400-8836200	Active TSS	Placenta	Placenta
41	chr12:8834600-8835000	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr12:8834600-8835000	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr12:8834600-8835000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr12:8834600-8835200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr12:8834600-8835800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr12:8834600-8839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr12:8834600-8840000	Weak transcription	Fetal Lung	lung
48	chr12:8834600-8840200	Weak transcription	HSMMtube	muscle
49	chr12:8834600-8840400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:8834600-8840600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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