Variant report

Variant	rs12299388
Chromosome Location	chr12:8877339-8877340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8865418..8868148-chr12:8875949..8879008,3	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10082851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	1.00[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12309620	1.00[AMR][1000 genomes]
rs12311048	1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12314072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12320520	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57750938	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58191549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783480	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783524	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8852600-8880000	Weak transcription	HMEC	breast
2	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr12:8853200-8934000	Weak transcription	K562	blood
4	chr12:8860000-8881600	Weak transcription	Spleen	Spleen
5	chr12:8862200-8880000	Weak transcription	Pancreas	Pancrea
6	chr12:8862400-8880000	Weak transcription	Esophagus	oesophagus
7	chr12:8862400-8894800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:8862400-8895000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:8862400-8902400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr12:8862600-8879000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr12:8862600-8894800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr12:8862800-8879600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr12:8862800-8880200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr12:8862800-8881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr12:8862800-8905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr12:8862800-8908000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:8864000-8877800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:8865000-8895200	Weak transcription	Psoas Muscle	Psoas
19	chr12:8865400-8878600	Weak transcription	Gastric	stomach
20	chr12:8865600-8887600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr12:8865800-8888600	Weak transcription	Brain Anterior Caudate	brain
22	chr12:8866000-8880000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:8866000-8895000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr12:8866000-8896600	Weak transcription	Brain Hippocampus Middle	brain
25	chr12:8866200-8879000	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr12:8866400-8878000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:8867200-8883600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr12:8868200-8881600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr12:8868200-8905400	Weak transcription	Right Ventricle	heart
30	chr12:8868800-8892800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr12:8870400-8881600	Strong transcription	Fetal Muscle Leg	muscle
32	chr12:8870600-8883600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr12:8871800-8878400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr12:8872000-8896600	Weak transcription	HUVEC	blood vessel
35	chr12:8872400-8878800	Strong transcription	Thymus	Thymus
36	chr12:8874200-8888200	Weak transcription	NHEK	skin
37	chr12:8874200-8894800	Weak transcription	HSMM	muscle
38	chr12:8874400-8877400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:8874400-8885400	Weak transcription	NH-A	brain
40	chr12:8874400-8888600	Weak transcription	A549	lung
41	chr12:8874400-8892000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr12:8875000-8877400	Enhancers	H1 Cell Line	embryonic stem cell
43	chr12:8875000-8877600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
44	chr12:8875000-8878600	Weak transcription	Placenta	Placenta
45	chr12:8875000-8880600	Weak transcription	Fetal Thymus	thymus
46	chr12:8875200-8877400	Genic enhancers	Hela-S3	cervix
47	chr12:8875200-8877600	Weak transcription	Primary T cells from cord blood	blood
48	chr12:8875200-8878000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr12:8875200-8879200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr12:8875400-8881600	Weak transcription	Primary B cells from cord blood	blood

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