Variant report

Variant	rs11047060
Chromosome Location	chr12:8903769-8903770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10082851	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	0.85[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296587	0.83[AMR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	0.83[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12309620	0.83[AMR][1000 genomes]
rs12311048	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs12314072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315165	0.82[YRI][hapmap]
rs12315566	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	0.87[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	0.85[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320520	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320578	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs9783480	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs9783524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:8853200-8934000	Weak transcription	K562	blood
3	chr12:8862800-8905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr12:8862800-8908000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:8868200-8905400	Weak transcription	Right Ventricle	heart
6	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
7	chr12:8877800-8904000	Weak transcription	Fetal Brain Male	brain
8	chr12:8878400-8904400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:8878400-8923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr12:8882200-8904800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr12:8882200-8938400	Weak transcription	Spleen	Spleen
13	chr12:8882200-8939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:8882400-8904200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:8882400-8905800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr12:8883200-8903800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr12:8883200-8904600	Weak transcription	Fetal Brain Female	brain
18	chr12:8883400-8938800	Weak transcription	Primary B cells from cord blood	blood
19	chr12:8886600-8912200	Weak transcription	Small Intestine	intestine
20	chr12:8888800-8932000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr12:8889200-8917400	Weak transcription	Fetal Heart	heart
22	chr12:8889200-8935800	Weak transcription	A549	lung
23	chr12:8889200-8936600	Weak transcription	Brain Angular Gyrus	brain
24	chr12:8890400-8911000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:8890600-8937000	Weak transcription	Colon Smooth Muscle	Colon
26	chr12:8893600-8905000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr12:8893800-8911000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr12:8894200-8937800	Weak transcription	Esophagus	oesophagus
29	chr12:8894400-8907200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr12:8894400-8920800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:8895400-8905400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr12:8895400-8923200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr12:8895400-8927600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:8895600-8903800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr12:8895600-8904400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr12:8895600-8904600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr12:8895600-8904600	Weak transcription	Osteobl	bone
38	chr12:8895600-8904800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:8895600-8904800	Weak transcription	Aorta	Aorta
40	chr12:8895600-8904800	Weak transcription	Lung	lung
41	chr12:8895600-8906200	Weak transcription	Left Ventricle	heart
42	chr12:8895600-8906400	Weak transcription	HSMM	muscle
43	chr12:8895600-8909000	Weak transcription	NHDF-Ad	bronchial
44	chr12:8895600-8911200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr12:8895600-8935200	Weak transcription	HMEC	breast
46	chr12:8895600-8937800	Weak transcription	HSMMtube	muscle
47	chr12:8895600-8941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:8895800-8904400	Weak transcription	Thymus	Thymus
49	chr12:8895800-8904800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr12:8895800-8906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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