Variant report

Variant	rs11502439
Chromosome Location	chr12:8946986-8946987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10082851	1.00[EUR][1000 genomes]
rs10082862	1.00[EUR][1000 genomes]
rs10129059	1.00[EUR][1000 genomes]
rs11046855	1.00[EUR][1000 genomes]
rs11046861	1.00[EUR][1000 genomes]
rs11046868	1.00[EUR][1000 genomes]
rs11046869	1.00[EUR][1000 genomes]
rs11046888	1.00[EUR][1000 genomes]
rs11046896	1.00[EUR][1000 genomes]
rs11046898	1.00[EUR][1000 genomes]
rs11046899	1.00[EUR][1000 genomes]
rs11046943	1.00[EUR][1000 genomes]
rs11047004	1.00[EUR][1000 genomes]
rs11047012	1.00[EUR][1000 genomes]
rs11047040	1.00[EUR][1000 genomes]
rs11047058	1.00[EUR][1000 genomes]
rs11047060	1.00[EUR][1000 genomes]
rs11047080	1.00[EUR][1000 genomes]
rs11047108	1.00[EUR][1000 genomes]
rs11047109	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12099874	1.00[EUR][1000 genomes]
rs12296102	1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	1.00[EUR][1000 genomes]
rs12298316	1.00[EUR][1000 genomes]
rs12299388	1.00[EUR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[EUR][1000 genomes]
rs12311048	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[EUR][1000 genomes]
rs12314072	1.00[EUR][1000 genomes]
rs12314823	1.00[EUR][1000 genomes]
rs12315566	1.00[EUR][1000 genomes]
rs12318911	1.00[EUR][1000 genomes]
rs12319105	1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320520	1.00[EUR][1000 genomes]
rs12320578	1.00[EUR][1000 genomes]
rs12321251	1.00[EUR][1000 genomes]
rs12322748	1.00[EUR][1000 genomes]
rs28651596	1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	1.00[EUR][1000 genomes]
rs58704538	1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	1.00[EUR][1000 genomes]
rs60389926	1.00[EUR][1000 genomes]
rs60467762	1.00[EUR][1000 genomes]
rs60925344	1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	1.00[EUR][1000 genomes]
rs7953800	1.00[EUR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	1.00[EUR][1000 genomes]
rs9783460	1.00[EUR][1000 genomes]
rs9783480	1.00[EUR][1000 genomes]
rs9783524	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8943000-8947400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr12:8943000-8947800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr12:8943400-8947200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr12:8943400-8947600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr12:8943400-8947800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr12:8943600-8947000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:8943600-8947800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:8944000-8950200	Weak transcription	Right Atrium	heart
9	chr12:8944400-8947000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:8944600-8947000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:8945000-8947800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:8945200-8947000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:8945200-8947000	Strong transcription	H9 Cell Line	embryonic stem cell
14	chr12:8945200-8958000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:8945800-8947000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr12:8945800-8949800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:8946200-8947600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr12:8946800-8947200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr12:8946800-8947800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:8946800-8947800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links