Variant report

Variant	rs12320520
Chromosome Location	chr12:8853078-8853079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10082851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046855	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046868	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046869	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046899	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11046943	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11047109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11502439	1.00[EUR][1000 genomes]
rs12099874	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296102	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297411	1.00[EUR][1000 genomes]
rs12297919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300722	1.00[AMR][1000 genomes]
rs12300916	1.00[EUR][1000 genomes]
rs12307497	1.00[EUR][1000 genomes]
rs12309620	1.00[AMR][1000 genomes]
rs12311048	1.00[EUR][1000 genomes]
rs12311105	1.00[EUR][1000 genomes]
rs12312707	1.00[EUR][1000 genomes]
rs12314072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314823	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318911	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319898	1.00[EUR][1000 genomes]
rs12320578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321251	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28812300	1.00[EUR][1000 genomes]
rs57750938	1.00[EUR][1000 genomes]
rs58191549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58704538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58777503	1.00[EUR][1000 genomes]
rs59291561	1.00[EUR][1000 genomes]
rs59480189	1.00[EUR][1000 genomes]
rs59705800	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60389926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60925344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61368791	1.00[EUR][1000 genomes]
rs7134750	1.00[EUR][1000 genomes]
rs7139182	1.00[EUR][1000 genomes]
rs7953439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953800	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963296	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7979018	1.00[EUR][1000 genomes]
rs7980514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783460	1.00[EUR][1000 genomes]
rs9783480	1.00[EUR][1000 genomes]
rs9783524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8851400-8853200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:8851400-8853200	Enhancers	Fetal Heart	heart
3	chr12:8851400-8862000	Weak transcription	Gastric	stomach
4	chr12:8851600-8855600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:8851600-8862000	Weak transcription	Lung	lung
6	chr12:8851800-8853200	Enhancers	Fetal Intestine Small	intestine
7	chr12:8851800-8853200	Enhancers	Fetal Thymus	thymus
8	chr12:8851800-8853200	Weak transcription	Right Atrium	heart
9	chr12:8851800-8853200	Enhancers	Thymus	Thymus
10	chr12:8851800-8853200	Enhancers	Osteobl	bone
11	chr12:8851800-8853400	Enhancers	Fetal Stomach	stomach
12	chr12:8851800-8854600	Weak transcription	Brain Substantia Nigra	brain
13	chr12:8851800-8855600	Weak transcription	Brain Angular Gyrus	brain
14	chr12:8851800-8859800	Weak transcription	Spleen	Spleen
15	chr12:8851800-8862000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr12:8851800-8862000	Weak transcription	Left Ventricle	heart
17	chr12:8851800-8862000	Weak transcription	HSMM	muscle
18	chr12:8851800-8862000	Weak transcription	HSMMtube	muscle
19	chr12:8851800-8863400	Weak transcription	Right Ventricle	heart
20	chr12:8851800-8873200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:8851800-8877200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:8852000-8853200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr12:8852000-8853200	Enhancers	Primary B cells from cord blood	blood
24	chr12:8852000-8853600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr12:8852000-8853800	Enhancers	Brain Hippocampus Middle	brain
26	chr12:8852000-8855000	Enhancers	Fetal Brain Male	brain
27	chr12:8852000-8855200	Weak transcription	Fetal Kidney	kidney
28	chr12:8852000-8861800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr12:8852200-8853200	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr12:8852200-8853200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr12:8852200-8853400	Genic enhancers	Dnd41	blood
32	chr12:8852400-8853200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr12:8852400-8853200	Enhancers	Psoas Muscle	Psoas
34	chr12:8852400-8853400	Enhancers	Brain Anterior Caudate	brain
35	chr12:8852400-8853400	Enhancers	Fetal Lung	lung
36	chr12:8852400-8853800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr12:8852400-8853800	Enhancers	Ovary	ovary
38	chr12:8852400-8859600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr12:8852600-8853200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
40	chr12:8852600-8853200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
41	chr12:8852600-8853200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr12:8852600-8853200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr12:8852600-8853200	Genic enhancers	Fetal Muscle Leg	muscle
44	chr12:8852600-8853200	Enhancers	Stomach Smooth Muscle	stomach
45	chr12:8852600-8853400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr12:8852600-8853400	Strong transcription	Placenta	Placenta
47	chr12:8852600-8853400	Strong transcription	NHEK	skin
48	chr12:8852600-8853600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr12:8852600-8853800	Enhancers	Rectal Smooth Muscle	rectum
50	chr12:8852600-8853800	Genic enhancers	Hela-S3	cervix

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