Variant report

Variant	rs7955163
Chromosome Location	chr12:8939697-8939698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:8935634-8939732	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000249790	TF binding region

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10082771	1.00[ASN][1000 genomes]
rs10128818	1.00[ASN][1000 genomes]
rs10505736	1.00[ASN][1000 genomes]
rs10842109	1.00[ASN][1000 genomes]
rs10842131	1.00[ASN][1000 genomes]
rs11046766	1.00[ASN][1000 genomes]
rs11046832	1.00[ASN][1000 genomes]
rs11046858	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046900	0.94[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11047042	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11047068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612882	1.00[ASN][1000 genomes]
rs11616092	1.00[ASN][1000 genomes]
rs12296571	0.92[ASN][1000 genomes]
rs12296587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12296895	1.00[ASN][1000 genomes]
rs12297411	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs12299708	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300013	1.00[ASN][1000 genomes]
rs12303275	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12304092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12304853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306245	1.00[ASN][1000 genomes]
rs12306562	1.00[ASN][1000 genomes]
rs12307610	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12309618	0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311263	0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311861	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312128	0.94[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314822	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12318215	0.94[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476902	1.00[ASN][1000 genomes]
rs16917739	0.84[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917746	0.89[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159889	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35146959	1.00[ASN][1000 genomes]
rs3858672	1.00[ASN][1000 genomes]
rs56094803	1.00[ASN][1000 genomes]
rs56113263	1.00[ASN][1000 genomes]
rs56387756	1.00[ASN][1000 genomes]
rs56837371	1.00[ASN][1000 genomes]
rs56878267	1.00[ASN][1000 genomes]
rs57676185	1.00[ASN][1000 genomes]
rs57747511	1.00[ASN][1000 genomes]
rs58333563	0.83[ASN][1000 genomes]
rs58451473	1.00[ASN][1000 genomes]
rs58503001	0.83[ASN][1000 genomes]
rs58544193	0.83[ASN][1000 genomes]
rs58612925	1.00[ASN][1000 genomes]
rs58732156	1.00[ASN][1000 genomes]
rs58863166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58866787	1.00[ASN][1000 genomes]
rs58998046	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59235894	1.00[ASN][1000 genomes]
rs59306936	1.00[ASN][1000 genomes]
rs59562279	1.00[ASN][1000 genomes]
rs59566766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59750351	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59824700	1.00[ASN][1000 genomes]
rs59935835	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60048072	1.00[ASN][1000 genomes]
rs60224353	1.00[ASN][1000 genomes]
rs60331702	1.00[ASN][1000 genomes]
rs60932450	1.00[ASN][1000 genomes]
rs61054720	1.00[ASN][1000 genomes]
rs61101189	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61187268	1.00[ASN][1000 genomes]
rs61395640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61431903	1.00[ASN][1000 genomes]
rs61450603	1.00[ASN][1000 genomes]
rs6487333	1.00[ASN][1000 genomes]
rs6487347	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487353	1.00[ASN][1000 genomes]
rs6487354	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487361	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7132012	0.83[ASN][1000 genomes]
rs7136480	1.00[ASN][1000 genomes]
rs7139182	0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs7299203	1.00[ASN][1000 genomes]
rs73036906	1.00[ASN][1000 genomes]
rs7303757	1.00[ASN][1000 genomes]
rs7307494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313569	1.00[CHB][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7316051	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059963	1.00[ASN][1000 genomes]
rs74059966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059969	1.00[ASN][1000 genomes]
rs74059978	1.00[ASN][1000 genomes]
rs74059985	1.00[ASN][1000 genomes]
rs74059990	0.85[ASN][1000 genomes]
rs74059992	1.00[ASN][1000 genomes]
rs74061803	1.00[ASN][1000 genomes]
rs74061818	1.00[ASN][1000 genomes]
rs7954527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960582	1.00[ASN][1000 genomes]
rs7961340	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964869	0.92[ASN][1000 genomes]
rs7968935	1.00[ASN][1000 genomes]
rs7972763	1.00[ASN][1000 genomes]
rs7973476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975293	1.00[ASN][1000 genomes]
rs7975977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977372	0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8895600-8941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:8899400-8941200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:8903000-8941200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:8905800-8941200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr12:8906000-8941200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:8906800-8941200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:8908600-8941000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:8908600-8941200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr12:8908600-8941200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:8926400-8941200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr12:8926800-8941400	Weak transcription	Primary T cells from cord blood	blood
12	chr12:8929000-8941400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:8930800-8941200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:8933400-8941000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:8936200-8941200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:8936200-8941200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr12:8936200-8941200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr12:8936200-8941200	Weak transcription	HUVEC	blood vessel
19	chr12:8936200-8941200	Weak transcription	Osteobl	bone
20	chr12:8936400-8941200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:8936400-8941200	Weak transcription	Fetal Thymus	thymus
22	chr12:8936600-8941200	Weak transcription	Adipose Nuclei	Adipose
23	chr12:8936800-8941200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr12:8937000-8941200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr12:8937000-8941200	Weak transcription	Fetal Muscle Leg	muscle
26	chr12:8937200-8941200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:8938400-8939800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr12:8938400-8940200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
29	chr12:8938400-8940200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:8938400-8940200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:8939000-8939800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr12:8939400-8941000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr12:8939600-8939800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:8939600-8941200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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