Variant report

Variant	rs12306245
Chromosome Location	chr12:8838023-8838024
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10082771	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10842109	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10842131	1.00[ASN][1000 genomes]
rs11046766	1.00[ASN][1000 genomes]
rs11046832	1.00[ASN][1000 genomes]
rs11046858	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11046872	1.00[ASN][1000 genomes]
rs11046887	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11046900	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11047042	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11047068	1.00[ASN][1000 genomes]
rs11612882	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11616092	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12296571	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12296587	1.00[ASN][1000 genomes]
rs12296895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12299640	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12299708	1.00[ASN][1000 genomes]
rs12300013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12302099	1.00[JPT][hapmap]
rs12303273	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12303275	0.92[ASN][1000 genomes]
rs12304092	1.00[ASN][1000 genomes]
rs12304853	1.00[ASN][1000 genomes]
rs12306562	1.00[ASN][1000 genomes]
rs12307610	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12309618	1.00[ASN][1000 genomes]
rs12311263	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12311861	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12312128	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12314360	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12314822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12316311	1.00[ASN][1000 genomes]
rs12318215	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1476902	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16917739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16917746	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2159889	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2302488	1.00[ASN][1000 genomes]
rs35146959	1.00[ASN][1000 genomes]
rs3858672	1.00[ASN][1000 genomes]
rs56094803	1.00[ASN][1000 genomes]
rs56113263	1.00[ASN][1000 genomes]
rs56387756	1.00[ASN][1000 genomes]
rs56837371	1.00[ASN][1000 genomes]
rs56878267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57541397	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57676185	1.00[ASN][1000 genomes]
rs57747511	1.00[ASN][1000 genomes]
rs58333563	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58451473	1.00[ASN][1000 genomes]
rs58503001	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58544193	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58612925	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58732156	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58863166	1.00[ASN][1000 genomes]
rs58866787	1.00[ASN][1000 genomes]
rs58998046	1.00[ASN][1000 genomes]
rs59235894	1.00[ASN][1000 genomes]
rs59306936	1.00[ASN][1000 genomes]
rs59433499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59562279	1.00[ASN][1000 genomes]
rs59566766	1.00[ASN][1000 genomes]
rs59750351	1.00[ASN][1000 genomes]
rs59824700	1.00[ASN][1000 genomes]
rs59935835	1.00[ASN][1000 genomes]
rs60048072	1.00[ASN][1000 genomes]
rs60224353	1.00[ASN][1000 genomes]
rs60331702	1.00[ASN][1000 genomes]
rs60932450	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61054720	1.00[ASN][1000 genomes]
rs61101189	1.00[ASN][1000 genomes]
rs61187268	1.00[ASN][1000 genomes]
rs61395640	1.00[ASN][1000 genomes]
rs61431903	1.00[ASN][1000 genomes]
rs61450603	1.00[ASN][1000 genomes]
rs6487313	1.00[JPT][hapmap]
rs6487333	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487347	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487353	1.00[ASN][1000 genomes]
rs6487354	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487361	1.00[ASN][1000 genomes]
rs7132012	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7136480	1.00[ASN][1000 genomes]
rs7139182	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7299203	1.00[ASN][1000 genomes]
rs73036906	1.00[ASN][1000 genomes]
rs7303757	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7307494	1.00[ASN][1000 genomes]
rs7313569	1.00[ASN][1000 genomes]
rs7313580	1.00[ASN][1000 genomes]
rs7313614	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7316051	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs74059963	1.00[ASN][1000 genomes]
rs74059966	1.00[ASN][1000 genomes]
rs74059968	1.00[ASN][1000 genomes]
rs74059969	1.00[ASN][1000 genomes]
rs74059978	1.00[ASN][1000 genomes]
rs74059985	1.00[ASN][1000 genomes]
rs74059990	0.85[ASN][1000 genomes]
rs74059992	1.00[ASN][1000 genomes]
rs74061803	1.00[ASN][1000 genomes]
rs74061818	1.00[ASN][1000 genomes]
rs7954527	1.00[ASN][1000 genomes]
rs7955163	1.00[ASN][1000 genomes]
rs7960582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7961340	1.00[ASN][1000 genomes]
rs7964869	0.92[ASN][1000 genomes]
rs7968935	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7972763	1.00[ASN][1000 genomes]
rs7973476	1.00[ASN][1000 genomes]
rs7975293	1.00[ASN][1000 genomes]
rs7975977	1.00[ASN][1000 genomes]
rs7977372	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8821600-8845000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:8828400-8840400	Weak transcription	Brain Anterior Caudate	brain
3	chr12:8830000-8840400	Weak transcription	Primary T cells from cord blood	blood
4	chr12:8834600-8839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:8834600-8840000	Weak transcription	Fetal Lung	lung
6	chr12:8834600-8840200	Weak transcription	HSMMtube	muscle
7	chr12:8834600-8840400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:8834600-8840600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:8834800-8838600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:8834800-8839800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr12:8834800-8840000	Weak transcription	NH-A	brain
12	chr12:8834800-8840400	Weak transcription	HSMM	muscle
13	chr12:8834800-8844800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr12:8834800-8848600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:8835000-8839600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr12:8835000-8839600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr12:8835000-8839600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr12:8835000-8839800	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:8835000-8840000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr12:8835000-8840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr12:8835000-8840000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr12:8835000-8840000	Weak transcription	Fetal Kidney	kidney
23	chr12:8835000-8840000	Weak transcription	Osteobl	bone
24	chr12:8835000-8840400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr12:8835200-8839400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr12:8835200-8839600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:8835200-8839600	Weak transcription	HUVEC	blood vessel
28	chr12:8835800-8840400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr12:8836000-8839400	Weak transcription	NHEK	skin
30	chr12:8836000-8840200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:8837200-8838200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr12:8837200-8838400	Transcr. at gene 5' and 3'	Hela-S3	cervix
33	chr12:8837600-8840200	Weak transcription	Placenta	Placenta
34	chr12:8837800-8839800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr12:8838000-8838200	Enhancers	Monocytes-CD14+_RO01746	blood

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