The 2.0 version of rSNPBase

Variant report

Variant rs58998046
Chromosome Location chr12:8905514-8905515
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:8852800-8908600 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr12:8853200-8934000 Weak transcription K562 blood
3 chr12:8862800-8908000 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr12:8875800-8933200 Weak transcription Fetal Kidney kidney
5 chr12:8878400-8923600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr12:8878400-8937200 Weak transcription Brain Cingulate Gyrus brain
7 chr12:8882200-8938400 Weak transcription Spleen Spleen
8 chr12:8882200-8939400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr12:8882400-8905800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr12:8883400-8938800 Weak transcription Primary B cells from cord blood blood
11 chr12:8886600-8912200 Weak transcription Small Intestine intestine
12 chr12:8888800-8932000 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr12:8889200-8917400 Weak transcription Fetal Heart heart
14 chr12:8889200-8935800 Weak transcription A549 lung
15 chr12:8889200-8936600 Weak transcription Brain Angular Gyrus brain
16 chr12:8890400-8911000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr12:8890600-8937000 Weak transcription Colon Smooth Muscle Colon
18 chr12:8893800-8911000 Weak transcription Brain Inferior Temporal Lobe brain
19 chr12:8894200-8937800 Weak transcription Esophagus oesophagus
20 chr12:8894400-8907200 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr12:8894400-8920800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr12:8895400-8923200 Weak transcription Placenta Amnion Placenta Amnion
23 chr12:8895400-8927600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr12:8895600-8906200 Weak transcription Left Ventricle heart
25 chr12:8895600-8906400 Weak transcription HSMM muscle
26 chr12:8895600-8909000 Weak transcription NHDF-Ad bronchial
27 chr12:8895600-8911200 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr12:8895600-8935200 Weak transcription HMEC breast
29 chr12:8895600-8937800 Weak transcription HSMMtube muscle
30 chr12:8895600-8941200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr12:8895800-8906200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr12:8896000-8908000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr12:8896600-8905600 Weak transcription Duodenum Mucosa Duodenum
34 chr12:8897000-8906400 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr12:8897000-8907000 Weak transcription Brain Germinal Matrix brain
36 chr12:8897000-8908000 Weak transcription Brain Hippocampus Middle brain
37 chr12:8897000-8931400 Weak transcription Brain Anterior Caudate brain
38 chr12:8897200-8905600 Weak transcription Brain Substantia Nigra brain
39 chr12:8899200-8912400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr12:8899400-8941200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr12:8901000-8912400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr12:8901200-8906400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr12:8901400-8906400 Weak transcription Primary T helper cells fromperipheralblood blood
44 chr12:8901400-8912400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr12:8901400-8913200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr12:8901600-8908400 Weak transcription Primary monocytes fromperipheralblood blood
47 chr12:8901800-8908400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr12:8902000-8910000 Strong transcription Fetal Muscle Trunk muscle
49 chr12:8902000-8912400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr12:8902000-8912400 Strong transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015