Variant report

Variant	rs1476902
Chromosome Location	chr12:8928462-8928463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10082771	1.00[ASN][1000 genomes]
rs10128818	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10505736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10842109	1.00[ASN][1000 genomes]
rs10842131	1.00[ASN][1000 genomes]
rs11046766	1.00[ASN][1000 genomes]
rs11046832	1.00[ASN][1000 genomes]
rs11046858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11046872	1.00[ASN][1000 genomes]
rs11046887	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11046900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11047042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11047068	1.00[ASN][1000 genomes]
rs11612882	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11616092	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12296571	0.92[ASN][1000 genomes]
rs12296587	1.00[ASN][1000 genomes]
rs12296895	1.00[ASN][1000 genomes]
rs12297411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12299708	1.00[ASN][1000 genomes]
rs12300013	1.00[ASN][1000 genomes]
rs12302099	1.00[JPT][hapmap]
rs12303273	1.00[JPT][hapmap]
rs12303275	0.92[ASN][1000 genomes]
rs12304092	1.00[ASN][1000 genomes]
rs12304853	1.00[ASN][1000 genomes]
rs12306245	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12306562	1.00[ASN][1000 genomes]
rs12307610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12309618	1.00[ASN][1000 genomes]
rs12311263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12311861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12312128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12314360	1.00[JPT][hapmap]
rs12314822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12316311	1.00[ASN][1000 genomes]
rs12318215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16917739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16917746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2159889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2302488	1.00[ASN][1000 genomes]
rs35146959	1.00[ASN][1000 genomes]
rs3858672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56094803	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56113263	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56387756	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56837371	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56878267	1.00[ASN][1000 genomes]
rs57676185	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57747511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58333563	0.83[ASN][1000 genomes]
rs58451473	1.00[ASN][1000 genomes]
rs58503001	0.83[ASN][1000 genomes]
rs58544193	0.83[ASN][1000 genomes]
rs58612925	1.00[ASN][1000 genomes]
rs58732156	1.00[ASN][1000 genomes]
rs58863166	1.00[ASN][1000 genomes]
rs58866787	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58998046	1.00[ASN][1000 genomes]
rs59235894	1.00[ASN][1000 genomes]
rs59306936	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59562279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59566766	1.00[ASN][1000 genomes]
rs59750351	1.00[ASN][1000 genomes]
rs59824700	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59935835	1.00[ASN][1000 genomes]
rs60048072	1.00[ASN][1000 genomes]
rs60224353	1.00[ASN][1000 genomes]
rs60331702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60932450	1.00[ASN][1000 genomes]
rs61054720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61101189	1.00[ASN][1000 genomes]
rs61187268	1.00[ASN][1000 genomes]
rs61395640	1.00[ASN][1000 genomes]
rs61431903	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61450603	1.00[ASN][1000 genomes]
rs6487313	1.00[JPT][hapmap]
rs6487333	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487353	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6487354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6487361	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7132012	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7136480	1.00[ASN][1000 genomes]
rs7139182	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7299203	1.00[ASN][1000 genomes]
rs73036906	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7303757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7307494	1.00[ASN][1000 genomes]
rs7313569	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7313580	1.00[ASN][1000 genomes]
rs7313614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7316051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs74059961	1.00[AMR][1000 genomes]
rs74059963	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74059966	1.00[ASN][1000 genomes]
rs74059968	1.00[ASN][1000 genomes]
rs74059969	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74059978	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74059985	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74059990	0.85[ASN][1000 genomes]
rs74059992	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74061803	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74061818	1.00[ASN][1000 genomes]
rs7954527	1.00[ASN][1000 genomes]
rs7955163	1.00[ASN][1000 genomes]
rs7960582	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7961340	1.00[ASN][1000 genomes]
rs7964869	0.92[ASN][1000 genomes]
rs7968935	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7972763	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7973476	1.00[ASN][1000 genomes]
rs7975293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7975977	1.00[ASN][1000 genomes]
rs7977372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8853200-8934000	Weak transcription	K562	blood
2	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
3	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr12:8882200-8938400	Weak transcription	Spleen	Spleen
5	chr12:8882200-8939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:8883400-8938800	Weak transcription	Primary B cells from cord blood	blood
7	chr12:8888800-8932000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr12:8889200-8935800	Weak transcription	A549	lung
9	chr12:8889200-8936600	Weak transcription	Brain Angular Gyrus	brain
10	chr12:8890600-8937000	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:8894200-8937800	Weak transcription	Esophagus	oesophagus
12	chr12:8895600-8935200	Weak transcription	HMEC	breast
13	chr12:8895600-8937800	Weak transcription	HSMMtube	muscle
14	chr12:8895600-8941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:8897000-8931400	Weak transcription	Brain Anterior Caudate	brain
16	chr12:8899400-8941200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr12:8903000-8941200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr12:8904600-8932000	Weak transcription	Gastric	stomach
19	chr12:8904600-8933200	Weak transcription	Fetal Brain Male	brain
20	chr12:8905000-8938400	Weak transcription	Pancreas	Pancrea
21	chr12:8905800-8941200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:8906000-8941200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr12:8906400-8937400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr12:8906800-8941200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr12:8907000-8935600	Weak transcription	HSMM	muscle
26	chr12:8907000-8935600	Weak transcription	Osteobl	bone
27	chr12:8907000-8938200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:8907200-8934000	Weak transcription	Brain Substantia Nigra	brain
29	chr12:8907200-8936000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr12:8907200-8937600	Weak transcription	NH-A	brain
31	chr12:8907400-8928600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr12:8907400-8930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr12:8908200-8930000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr12:8908600-8931800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr12:8908600-8932000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr12:8908600-8941000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr12:8908600-8941200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr12:8908600-8941200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr12:8909800-8936400	Weak transcription	Brain Hippocampus Middle	brain
40	chr12:8911600-8937800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr12:8911800-8935600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr12:8913800-8938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr12:8918400-8935800	Weak transcription	NHLF	lung
44	chr12:8918400-8937200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:8921000-8936200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr12:8921000-8937200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr12:8922200-8936200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr12:8922800-8928600	Weak transcription	NHDF-Ad	bronchial
49	chr12:8923000-8931400	Strong transcription	Dnd41	blood
50	chr12:8923400-8931200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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