Variant report

Variant	rs11046949
Chromosome Location	chr12:8883322-8883323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10505735	0.83[CEU][hapmap]
rs10505736	0.83[CEU][hapmap]
rs11046832	0.88[CEU][hapmap]
rs11612882	0.83[CEU][hapmap]
rs11616092	0.83[CEU][hapmap]
rs12297119	0.90[EUR][1000 genomes]
rs2377585	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6487333	0.89[CEU][hapmap]
rs73053878	0.91[EUR][1000 genomes]
rs7976729	0.83[CEU][hapmap]

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:8853200-8934000	Weak transcription	K562	blood
3	chr12:8862400-8894800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr12:8862400-8895000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:8862400-8902400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:8862600-8894800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr12:8862800-8905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr12:8862800-8908000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr12:8865000-8895200	Weak transcription	Psoas Muscle	Psoas
10	chr12:8865600-8887600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr12:8865800-8888600	Weak transcription	Brain Anterior Caudate	brain
12	chr12:8866000-8895000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr12:8866000-8896600	Weak transcription	Brain Hippocampus Middle	brain
14	chr12:8867200-8883600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr12:8868200-8905400	Weak transcription	Right Ventricle	heart
16	chr12:8868800-8892800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:8870600-8883600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:8872000-8896600	Weak transcription	HUVEC	blood vessel
19	chr12:8874200-8888200	Weak transcription	NHEK	skin
20	chr12:8874200-8894800	Weak transcription	HSMM	muscle
21	chr12:8874400-8885400	Weak transcription	NH-A	brain
22	chr12:8874400-8888600	Weak transcription	A549	lung
23	chr12:8874400-8892000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr12:8875400-8884000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:8875600-8894800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr12:8875600-8895000	Weak transcription	HSMMtube	muscle
27	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
28	chr12:8876000-8887600	Weak transcription	Colon Smooth Muscle	Colon
29	chr12:8876200-8887200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr12:8876200-8887600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr12:8877400-8887800	Weak transcription	Brain Substantia Nigra	brain
32	chr12:8877600-8888400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr12:8877600-8902600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr12:8877800-8894800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr12:8877800-8904000	Weak transcription	Fetal Brain Male	brain
36	chr12:8878400-8904400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr12:8878400-8923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr12:8878800-8887800	Weak transcription	Left Ventricle	heart
40	chr12:8879800-8894800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr12:8879800-8902400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr12:8880200-8888400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr12:8880800-8883400	Strong transcription	Hela-S3	cervix
44	chr12:8881200-8883400	ZNF genes & repeats	Fetal Stomach	stomach
45	chr12:8881200-8883600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr12:8881800-8888600	Weak transcription	Aorta	Aorta
47	chr12:8881800-8892800	Weak transcription	Placenta	Placenta
48	chr12:8882000-8883400	Strong transcription	Primary B cells from cord blood	blood
49	chr12:8882000-8886400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr12:8882000-8886400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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