Variant report

Variant	rs10771102
Chromosome Location	chr12:24770412-24770413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10743510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10743513	1.00[AMR][1000 genomes]
rs10771101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10771112	1.00[AMR][1000 genomes]
rs1115525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1386641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1386643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1487652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1487653	1.00[AMR][1000 genomes]
rs1872642	1.00[EUR][1000 genomes]
rs2200502	1.00[EUR][1000 genomes]
rs2354628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2883333	1.00[EUR][1000 genomes]
rs2955480	1.00[EUR][1000 genomes]
rs2955482	1.00[EUR][1000 genomes]
rs2955483	1.00[EUR][1000 genomes]
rs2955484	1.00[AMR][1000 genomes]
rs2955485	1.00[AMR][1000 genomes]
rs2955486	1.00[AMR][1000 genomes]
rs2970414	1.00[EUR][1000 genomes]
rs2970416	1.00[EUR][1000 genomes]
rs2970420	1.00[AMR][1000 genomes]
rs3110019	1.00[EUR][1000 genomes]
rs3110020	1.00[EUR][1000 genomes]
rs3112129	1.00[EUR][1000 genomes]
rs3112130	1.00[EUR][1000 genomes]
rs3112131	1.00[EUR][1000 genomes]
rs3112132	1.00[AMR][1000 genomes]
rs4029339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4255625	1.00[EUR][1000 genomes]
rs4348994	1.00[EUR][1000 genomes]
rs4963585	1.00[EUR][1000 genomes]
rs4963800	1.00[EUR][1000 genomes]
rs6487402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6487403	1.00[AMR][1000 genomes]
rs7136296	1.00[EUR][1000 genomes]
rs7136885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7980315	1.00[EUR][1000 genomes]
rs936901	1.00[EUR][1000 genomes]
rs962728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs997025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422312	chr12:24519392-25221686	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1046463	chr12:24538432-24916851	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv898920	chr12:24648863-25147192	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv915555	chr12:24666481-24952013	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:24767800-24770800	Active TSS	Dnd41	blood
2	chr12:24768400-24771000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr12:24768800-24771200	Enhancers	Osteobl	bone
4	chr12:24769000-24771200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:24769200-24771200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:24769400-24770600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:24769600-24770600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:24770000-24770800	Enhancers	NH-A	brain
9	chr12:24770000-24771200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:24770000-24771400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:24770200-24770600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:24770200-24770800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr12:24770200-24771400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:24770400-24770600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:24770400-24771000	Enhancers	HUVEC	blood vessel
16	chr12:24770400-24771200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr12:24770400-24771200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:24770400-24771200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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