Variant report

Variant	rs4029339
Chromosome Location	chr12:24778192-24778193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10743510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10743513	1.00[AMR][1000 genomes]
rs10771101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10771102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10771112	1.00[AMR][1000 genomes]
rs1115525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1386641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1386643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1487652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1487653	1.00[AMR][1000 genomes]
rs1872642	1.00[EUR][1000 genomes]
rs1872643	1.00[EUR][1000 genomes]
rs2200502	1.00[EUR][1000 genomes]
rs2354628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2883333	1.00[EUR][1000 genomes]
rs2955480	1.00[EUR][1000 genomes]
rs2955482	1.00[EUR][1000 genomes]
rs2955483	1.00[EUR][1000 genomes]
rs2955484	1.00[AMR][1000 genomes]
rs2955485	1.00[AMR][1000 genomes]
rs2955486	1.00[AMR][1000 genomes]
rs2970414	1.00[EUR][1000 genomes]
rs2970416	1.00[EUR][1000 genomes]
rs2970420	1.00[AMR][1000 genomes]
rs3110019	1.00[EUR][1000 genomes]
rs3110020	1.00[EUR][1000 genomes]
rs3112129	1.00[EUR][1000 genomes]
rs3112130	1.00[EUR][1000 genomes]
rs3112131	1.00[EUR][1000 genomes]
rs3112132	1.00[AMR][1000 genomes]
rs4255625	1.00[EUR][1000 genomes]
rs4348994	1.00[EUR][1000 genomes]
rs4963585	1.00[EUR][1000 genomes]
rs4963800	1.00[EUR][1000 genomes]
rs6487402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6487403	1.00[AMR][1000 genomes]
rs7136296	1.00[EUR][1000 genomes]
rs7136885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7980315	1.00[EUR][1000 genomes]
rs936901	1.00[EUR][1000 genomes]
rs962728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs997025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422312	chr12:24519392-25221686	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1046463	chr12:24538432-24916851	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv898920	chr12:24648863-25147192	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv915555	chr12:24666481-24952013	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv1053309	chr12:24770995-25078227	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:24777800-24778600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr12:24778000-24778200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr12:24778000-24778400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:24778000-24778400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:24778000-24778400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:24778000-24778600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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