Variant report

Variant	rs10771256
Chromosome Location	chr12:26183086-26183087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26110820..26113756-chr12:26181378..26183569,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246695	Chromatin interaction
ENSG00000123094	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10771251	0.87[ASN][1000 genomes]
rs10771252	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10771253	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10842646	0.87[ASN][1000 genomes]
rs10842650	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11048365	0.87[ASN][1000 genomes]
rs11048368	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11048385	0.99[ASN][1000 genomes]
rs12811312	0.87[ASN][1000 genomes]
rs1874349	0.86[ASN][1000 genomes]
rs7971740	0.87[ASN][1000 genomes]
rs7977148	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26169400-26185400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:26170800-26185600	Weak transcription	Aorta	Aorta
3	chr12:26171000-26183800	Weak transcription	Hela-S3	cervix
4	chr12:26171000-26190600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr12:26173400-26186800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:26174600-26185600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:26174800-26185600	Weak transcription	Ovary	ovary
8	chr12:26175000-26190600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:26175000-26191000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:26175200-26186800	Weak transcription	Psoas Muscle	Psoas
11	chr12:26175200-26190800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr12:26175400-26185800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:26175400-26190000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:26176000-26184200	Weak transcription	Left Ventricle	heart
15	chr12:26179800-26186000	Enhancers	Colon Smooth Muscle	Colon
16	chr12:26180000-26188200	Enhancers	NHDF-Ad	bronchial
17	chr12:26180200-26188200	Enhancers	Brain Hippocampus Middle	brain
18	chr12:26180600-26183800	Enhancers	Brain Cingulate Gyrus	brain
19	chr12:26180600-26184400	Enhancers	Rectal Smooth Muscle	rectum
20	chr12:26180600-26187400	Weak transcription	NH-A	brain
21	chr12:26180800-26188200	Enhancers	Brain Substantia Nigra	brain
22	chr12:26180800-26195000	Weak transcription	HSMM	muscle
23	chr12:26181000-26183400	Weak transcription	Fetal Kidney	kidney
24	chr12:26181000-26184200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr12:26181000-26195200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr12:26181200-26183600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr12:26181400-26184200	Enhancers	Osteobl	bone
28	chr12:26181800-26183600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr12:26181800-26185200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr12:26182000-26183600	Enhancers	Brain Anterior Caudate	brain
31	chr12:26182000-26184000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr12:26182200-26183200	Weak transcription	Brain Angular Gyrus	brain
33	chr12:26182200-26186800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr12:26182200-26186800	Weak transcription	Pancreas	Pancrea
35	chr12:26182200-26190600	Weak transcription	Gastric	stomach
36	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:26182400-26183600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr12:26182400-26184200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:26182400-26185600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr12:26182400-26186000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr12:26182600-26183200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr12:26182600-26183400	Enhancers	Fetal Lung	lung
43	chr12:26182600-26184400	Weak transcription	Right Atrium	heart
44	chr12:26182600-26184800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr12:26182600-26185000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr12:26182600-26185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr12:26182600-26185200	Weak transcription	NHLF	lung
48	chr12:26182600-26185400	Weak transcription	Fetal Intestine Small	intestine
49	chr12:26182600-26185600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr12:26182600-26188200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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