Variant report

Variant	rs1874349
Chromosome Location	chr12:26115507-26115508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26115121..26117506-chr12:26161572..26164104,2	MCF-7	breast:
2	chr12:26112991..26115825-chr12:26120756..26122747,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10771249	0.80[ASN][1000 genomes]
rs10771251	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771252	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771253	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771256	0.86[ASN][1000 genomes]
rs10842641	0.82[ASN][1000 genomes]
rs10842642	0.81[ASN][1000 genomes]
rs10842645	0.82[ASN][1000 genomes]
rs10842646	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10842647	0.82[ASN][1000 genomes]
rs10842648	0.82[ASN][1000 genomes]
rs10842650	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11048363	0.82[ASN][1000 genomes]
rs11048364	0.82[ASN][1000 genomes]
rs11048365	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11048367	0.82[ASN][1000 genomes]
rs11048368	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11048385	0.88[ASN][1000 genomes]
rs12811312	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063620	0.82[ASN][1000 genomes]
rs6487522	0.82[ASN][1000 genomes]
rs7964657	0.82[ASN][1000 genomes]
rs7971740	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7977148	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7979763	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26112800-26116600	Weak transcription	Spleen	Spleen
2	chr12:26112800-26120600	Weak transcription	Pancreas	Pancrea
3	chr12:26113000-26123600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:26113400-26116400	Weak transcription	Esophagus	oesophagus
5	chr12:26113400-26116400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr12:26113400-26117000	Enhancers	Brain Substantia Nigra	brain
7	chr12:26113400-26118800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:26113400-26121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:26113400-26123600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:26113400-26123600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr12:26113400-26126200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr12:26113400-26128800	Weak transcription	HSMM	muscle
13	chr12:26113600-26116000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr12:26113600-26116400	Weak transcription	Adipose Nuclei	Adipose
15	chr12:26113600-26118200	Weak transcription	HSMMtube	muscle
16	chr12:26113800-26115800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr12:26113800-26116200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr12:26113800-26116400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr12:26113800-26116400	Weak transcription	Ovary	ovary
20	chr12:26113800-26116600	Weak transcription	Fetal Stomach	stomach
21	chr12:26113800-26120600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr12:26113800-26122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:26113800-26122600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr12:26113800-26124000	Weak transcription	Fetal Intestine Large	intestine
25	chr12:26114000-26116000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr12:26114000-26116000	Weak transcription	Right Atrium	heart
27	chr12:26114000-26116400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:26114000-26116400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr12:26114000-26117600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr12:26114000-26126600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr12:26114000-26128000	Weak transcription	Fetal Intestine Small	intestine
32	chr12:26114200-26115800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr12:26114200-26116000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:26114200-26117200	Enhancers	Rectal Smooth Muscle	rectum
35	chr12:26114200-26117600	Enhancers	Colon Smooth Muscle	Colon
36	chr12:26114200-26125600	Weak transcription	HMEC	breast
37	chr12:26114400-26116200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr12:26114400-26123000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr12:26114600-26116000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr12:26114600-26116000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr12:26114600-26116400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr12:26114600-26116400	Weak transcription	Brain Anterior Caudate	brain
43	chr12:26114600-26116600	Weak transcription	Psoas Muscle	Psoas
44	chr12:26114600-26117400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr12:26114600-26122200	Weak transcription	NH-A	brain
46	chr12:26114600-26122400	Weak transcription	Osteobl	bone
47	chr12:26114800-26116000	Weak transcription	NHLF	lung
48	chr12:26114800-26116400	Weak transcription	Fetal Heart	heart
49	chr12:26114800-26116800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:26114800-26117200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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