Variant report

Variant	rs10771271
Chromosome Location	chr12:26372651-26372652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1064750	0.95[ASN][1000 genomes]
rs11048431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835695	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17381533	0.88[CEU][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs748889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1840338	chr12:26367307-26390319	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26358600-26379000	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:26359200-26379600	Weak transcription	Aorta	Aorta
3	chr12:26359600-26379000	Weak transcription	Brain Angular Gyrus	brain
4	chr12:26360000-26372800	Weak transcription	Brain Hippocampus Middle	brain
5	chr12:26365000-26377400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:26366000-26379400	Weak transcription	Ovary	ovary
7	chr12:26366600-26390600	Weak transcription	HSMMtube	muscle
8	chr12:26367400-26372800	Weak transcription	Psoas Muscle	Psoas
9	chr12:26367400-26379000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr12:26372000-26373400	Enhancers	Fetal Heart	heart
11	chr12:26372200-26379200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr12:26372400-26375200	Weak transcription	Fetal Intestine Small	intestine
13	chr12:26372400-26378200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr12:26372600-26373000	Enhancers	Left Ventricle	heart
15	chr12:26372600-26373200	Enhancers	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links