Variant report

Variant	rs11835695
Chromosome Location	chr12:26384555-26384556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR2-2	chr12:26384327-26384713	ENSG00000255750.1

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1064750	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10771271	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11048431	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17381533	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs748889	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs755987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1840338	chr12:26367307-26390319	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11835695	KRAS	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26366600-26390600	Weak transcription	HSMMtube	muscle
2	chr12:26380000-26393400	Weak transcription	Esophagus	oesophagus
3	chr12:26380000-26393400	Weak transcription	Left Ventricle	heart
4	chr12:26380200-26391200	Weak transcription	HSMM	muscle
5	chr12:26380200-26391800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:26380200-26391800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:26380200-26391800	Weak transcription	Right Ventricle	heart
8	chr12:26380200-26392000	Weak transcription	Aorta	Aorta
9	chr12:26380400-26391800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:26380400-26392200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr12:26380600-26386600	Weak transcription	Fetal Stomach	stomach
12	chr12:26380600-26391800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr12:26380800-26386600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:26380800-26391200	Weak transcription	Brain Hippocampus Middle	brain
15	chr12:26380800-26391800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr12:26381000-26386400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr12:26383400-26387200	Weak transcription	Fetal Intestine Small	intestine
18	chr12:26383600-26384600	Enhancers	Ovary	ovary
19	chr12:26383800-26384600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr12:26383800-26391400	Weak transcription	NHDF-Ad	bronchial
21	chr12:26384200-26384600	Enhancers	Stomach Smooth Muscle	stomach
22	chr12:26384200-26385400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr12:26384400-26384600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr12:26384400-26384600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr12:26384400-26384600	Genic enhancers	Fetal Muscle Leg	muscle

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