Variant report

Variant	rs10772014
Chromosome Location	chr12:33073803-33073804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32909522..32911268-chr12:33072253..33074480,2	MCF-7	breast:
2	chr12:33073552..33076364-chr12:33762087..33763941,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10743807	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772015	1.00[EUR][1000 genomes]
rs10772016	1.00[EUR][1000 genomes]
rs11052313	1.00[EUR][1000 genomes]
rs11052314	1.00[EUR][1000 genomes]
rs2045171	0.89[CHB][hapmap]
rs4244862	1.00[EUR][1000 genomes]
rs4394915	1.00[EUR][1000 genomes]
rs4420362	0.89[CHB][hapmap]
rs4931053	1.00[EUR][1000 genomes]
rs4931661	1.00[EUR][1000 genomes]
rs4931667	1.00[EUR][1000 genomes]
rs4931668	1.00[EUR][1000 genomes]
rs4931680	1.00[EUR][1000 genomes]
rs6488104	1.00[ASN][1000 genomes]
rs6488107	1.00[EUR][1000 genomes]
rs7133084	1.00[EUR][1000 genomes]
rs7962019	1.00[EUR][1000 genomes]
rs7965208	1.00[EUR][1000 genomes]
rs7979825	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1035900	chr12:33010643-33079667	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv541458	chr12:33010643-33079667	Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33069400-33075200	Enhancers	Hela-S3	cervix
2	chr12:33069600-33076400	Enhancers	HMEC	breast
3	chr12:33070000-33074800	Weak transcription	HSMM	muscle
4	chr12:33070200-33074600	Weak transcription	HSMMtube	muscle
5	chr12:33071600-33075200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr12:33072200-33075200	Enhancers	HUVEC	blood vessel
7	chr12:33072600-33074200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr12:33072600-33076400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:33072800-33076200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:33073000-33075200	Enhancers	NH-A	brain
11	chr12:33073000-33076200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:33073200-33074000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr12:33073200-33075000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:33073600-33074000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:33073600-33074000	Flanking Active TSS	A549	lung
16	chr12:33073800-33074000	Flanking Active TSS	NHEK	skin

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