Variant report

Variant	rs10772102
Chromosome Location	chr12:9896953-9896954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9884042..9890048-chr12:9890384..9897967,9	K562	blood:
2	chr12:9894583..9897209-chr12:9902973..9905034,4	K562	blood:
3	chr12:9895231..9897767-chr12:9915766..9917544,2	K562	blood:

Variant related genes	Relation type
ENSG00000184293	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1008610	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1044771	0.85[JPT][hapmap]
rs10466829	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10492165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10492166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10743819	0.85[ASN][1000 genomes]
rs10743823	0.86[JPT][hapmap]
rs10772046	0.82[ASN][1000 genomes]
rs10772062	0.84[ASN][1000 genomes]
rs10772070	0.88[ASN][1000 genomes]
rs10772071	0.88[ASN][1000 genomes]
rs10772072	0.88[ASN][1000 genomes]
rs10772073	0.88[ASN][1000 genomes]
rs10772074	0.89[ASN][1000 genomes]
rs10772079	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10772085	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10772087	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10772090	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10772091	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10772092	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10772094	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10772108	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844456	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10844468	0.82[ASN][1000 genomes]
rs10844503	0.81[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10844537	0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10844562	0.85[ASN][1000 genomes]
rs10844569	0.89[ASN][1000 genomes]
rs10844597	0.82[ASN][1000 genomes]
rs10844609	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844610	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10844615	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844617	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10844620	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844622	0.89[ASN][1000 genomes]
rs10844626	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844627	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844630	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844632	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844633	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844635	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844636	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844637	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844638	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844639	0.86[ASN][1000 genomes]
rs10844640	0.82[ASN][1000 genomes]
rs10844657	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844682	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844706	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs11052372	0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs11052423	0.89[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs11052426	0.81[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11052552	0.89[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11052604	0.83[ASN][1000 genomes]
rs11052710	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11052713	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052717	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11052750	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11052751	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11052752	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11052756	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052877	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12227655	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12228641	0.84[ASN][1000 genomes]
rs12304510	0.89[ASN][1000 genomes]
rs12317499	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17806710	0.89[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2058560	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2080211	0.85[JPT][hapmap]
rs2098298	0.94[JPT][hapmap]
rs2114870	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2192437	0.87[ASN][1000 genomes]
rs2268146	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2401390	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2401391	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2401393	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2401394	0.87[ASN][1000 genomes]
rs2401395	0.87[ASN][1000 genomes]
rs3764021	0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs3764022	0.81[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4763840	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4763879	0.82[JPT][hapmap]
rs7296241	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7306304	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7306557	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7307111	0.85[ASN][1000 genomes]
rs7310460	0.85[JPT][hapmap]
rs741199	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7956831	0.90[ASN][1000 genomes]
rs7970116	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7973535	0.87[ASN][1000 genomes]
rs7973638	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7974396	0.90[JPT][hapmap]
rs7976584	0.87[ASN][1000 genomes]
rs7977720	0.84[ASN][1000 genomes]
rs917911	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv8911	chr12:9895900-9897691	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv976572	chr12:9896625-9906830	Genic enhancers ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9890400-9897600	Weak transcription	HUVEC	blood vessel
2	chr12:9892800-9903200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:9893400-9910800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:9895600-9897200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr12:9895600-9897200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr12:9895600-9897400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr12:9895600-9906000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr12:9895800-9897200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr12:9895800-9897400	Enhancers	Primary T cells from cord blood	blood
10	chr12:9895800-9897400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr12:9895800-9898000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr12:9895800-9903200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr12:9896200-9903200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr12:9896400-9898000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr12:9896400-9903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr12:9896400-9911000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr12:9896600-9903000	Weak transcription	Primary B cells from cord blood	blood
18	chr12:9896800-9900800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr12:9896800-9902800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:9896800-9903000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:9896800-9903000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:9896800-9903200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr12:9896800-9903200	Weak transcription	GM12878-XiMat	blood
24	chr12:9896800-9903400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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