Variant report
Variant | rs10743819 |
---|---|
Chromosome Location | chr12:9876768-9876769 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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No data |
(count:4 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
CLECL1 | TF binding region |
ENSG00000233719 | Chromatin interaction |
ENSG00000272917 | Chromatin interaction |
ENSG00000184293 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1008610 | 0.92[ASN][1000 genomes] |
rs10466829 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10492165 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10492166 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10743823 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10772046 | 0.87[ASN][1000 genomes] |
rs10772062 | 0.89[ASN][1000 genomes] |
rs10772070 | 0.94[ASN][1000 genomes] |
rs10772071 | 0.94[ASN][1000 genomes] |
rs10772072 | 0.94[ASN][1000 genomes] |
rs10772073 | 0.94[ASN][1000 genomes] |
rs10772074 | 0.95[ASN][1000 genomes] |
rs10772079 | 0.95[ASN][1000 genomes] |
rs10772085 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10772087 | 0.92[ASN][1000 genomes] |
rs10772090 | 0.90[ASN][1000 genomes] |
rs10772091 | 0.92[ASN][1000 genomes] |
rs10772092 | 0.92[ASN][1000 genomes] |
rs10772094 | 0.92[ASN][1000 genomes] |
rs10772102 | 0.85[ASN][1000 genomes] |
rs10772108 | 0.84[ASN][1000 genomes] |
rs10844456 | 0.87[ASN][1000 genomes] |
rs10844468 | 0.87[ASN][1000 genomes] |
rs10844503 | 0.87[ASN][1000 genomes] |
rs10844537 | 0.89[ASN][1000 genomes] |
rs10844562 | 0.91[ASN][1000 genomes] |
rs10844569 | 0.95[ASN][1000 genomes] |
rs10844597 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10844609 | 0.95[ASN][1000 genomes] |
rs10844610 | 0.93[ASN][1000 genomes] |
rs10844615 | 0.95[ASN][1000 genomes] |
rs10844617 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10844620 | 0.93[ASN][1000 genomes] |
rs10844622 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10844626 | 0.92[ASN][1000 genomes] |
rs10844627 | 0.92[ASN][1000 genomes] |
rs10844630 | 0.92[ASN][1000 genomes] |
rs10844632 | 0.92[ASN][1000 genomes] |
rs10844633 | 0.92[ASN][1000 genomes] |
rs10844635 | 0.92[ASN][1000 genomes] |
rs10844636 | 0.92[ASN][1000 genomes] |
rs10844637 | 0.92[ASN][1000 genomes] |
rs10844638 | 0.92[ASN][1000 genomes] |
rs10844639 | 0.87[ASN][1000 genomes] |
rs10844640 | 0.87[ASN][1000 genomes] |
rs10844657 | 0.87[ASN][1000 genomes] |
rs10844682 | 0.84[ASN][1000 genomes] |
rs11052372 | 0.86[ASN][1000 genomes] |
rs11052423 | 0.87[ASN][1000 genomes] |
rs11052426 | 0.87[ASN][1000 genomes] |
rs11052552 | 0.89[ASN][1000 genomes] |
rs11052604 | 0.89[ASN][1000 genomes] |
rs11052710 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11052713 | 0.93[ASN][1000 genomes] |
rs11052717 | 0.95[ASN][1000 genomes] |
rs11052750 | 0.92[ASN][1000 genomes] |
rs11052751 | 0.92[ASN][1000 genomes] |
rs11052752 | 0.92[ASN][1000 genomes] |
rs11052756 | 0.89[ASN][1000 genomes] |
rs12227655 | 0.91[ASN][1000 genomes] |
rs12228641 | 0.90[ASN][1000 genomes] |
rs12304510 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12317499 | 0.93[ASN][1000 genomes] |
rs17806710 | 0.87[ASN][1000 genomes] |
rs1985788 | 0.85[ASN][1000 genomes] |
rs2058560 | 0.95[ASN][1000 genomes] |
rs2080206 | 0.81[ASN][1000 genomes] |
rs2192437 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2268146 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2401390 | 0.95[ASN][1000 genomes] |
rs2401391 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2401393 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2401394 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2401395 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3764021 | 0.89[ASN][1000 genomes] |
rs3764022 | 0.87[ASN][1000 genomes] |
rs4763839 | 0.85[ASN][1000 genomes] |
rs4763840 | 0.84[ASN][1000 genomes] |
rs7296241 | 0.95[ASN][1000 genomes] |
rs7306304 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7306557 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7307111 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs741199 | 0.95[ASN][1000 genomes] |
rs741200 | 0.87[ASN][1000 genomes] |
rs7956831 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7968401 | 0.87[ASN][1000 genomes] |
rs7970116 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7973535 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7973638 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7976584 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7977720 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2758293 | chr12:9371595-9923529 | Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 40 gene(s) | inside rSNPs | diseases |
2 | esv2759878 | chr12:9371595-9923529 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 40 gene(s) | inside rSNPs | diseases |
3 | nsv983235 | chr12:9852218-9893776 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | esv2757490 | chr12:9855958-9888553 | Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:9861600-9882400 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
2 | chr12:9864600-9883800 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
3 | chr12:9868600-9879200 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
4 | chr12:9873600-9876800 | Enhancers | Primary B cells from peripheral blood | blood |
5 | chr12:9873600-9877600 | Flanking Active TSS | GM12878-XiMat | blood |
6 | chr12:9874400-9877800 | Weak transcription | NHEK | skin |
7 | chr12:9874400-9878000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
8 | chr12:9874400-9881400 | Enhancers | Primary B cells from cord blood | blood |
9 | chr12:9874600-9878000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
10 | chr12:9875000-9881200 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
11 | chr12:9875400-9877400 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
12 | chr12:9875600-9880000 | Weak transcription | HUVEC | blood vessel |
13 | chr12:9876400-9876800 | Enhancers | Primary monocytes fromperipheralblood | blood |