The 2.0 version of rSNPBase

Variant report

Variant rs7968401
Chromosome Location chr12:9846521-9846522
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:9802400-9849800 Weak transcription Pancreas Pancrea
2 chr12:9807600-9847200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr12:9818000-9849800 Weak transcription Brain Germinal Matrix brain
4 chr12:9826400-9849000 Weak transcription Psoas Muscle Psoas
5 chr12:9826600-9847200 Weak transcription H1 Cell Line embryonic stem cell
6 chr12:9826600-9852400 Weak transcription Colon Smooth Muscle Colon
7 chr12:9826800-9848400 Weak transcription Colonic Mucosa Colon
8 chr12:9826800-9849400 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr12:9826800-9849800 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr12:9826800-9854400 Weak transcription Esophagus oesophagus
11 chr12:9827000-9853200 Weak transcription Rectal Smooth Muscle rectum
12 chr12:9827200-9847000 Weak transcription NH-A brain
13 chr12:9827200-9847400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr12:9827200-9847600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr12:9827200-9851000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr12:9827200-9851600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr12:9827200-9852400 Weak transcription Osteobl bone
18 chr12:9827400-9849000 Weak transcription A549 lung
19 chr12:9833000-9849000 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr12:9833200-9847200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr12:9835400-9849200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr12:9835800-9847000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr12:9837000-9847400 Weak transcription Fetal Brain Female brain
24 chr12:9837800-9846800 Strong transcription Primary neutrophils fromperipheralblood blood
25 chr12:9837800-9849400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr12:9838200-9849800 Strong transcription Fetal Thymus thymus
27 chr12:9838400-9849600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr12:9838800-9849200 Strong transcription Primary hematopoietic stem cells short term culture blood
29 chr12:9838800-9854400 Weak transcription Spleen Spleen
30 chr12:9839000-9854400 Weak transcription Lung lung
31 chr12:9839400-9848800 Weak transcription Brain Substantia Nigra brain
32 chr12:9839400-9854600 Weak transcription Small Intestine intestine
33 chr12:9840000-9849000 Weak transcription H9 Cell Line embryonic stem cell
34 chr12:9840200-9848200 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr12:9840400-9847000 Weak transcription Ovary ovary
36 chr12:9840400-9847800 Weak transcription Aorta Aorta
37 chr12:9840600-9848400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr12:9840600-9864600 Weak transcription Placenta Amnion Placenta Amnion
39 chr12:9840800-9847800 Strong transcription Primary B cells from peripheral blood blood
40 chr12:9841000-9849600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
41 chr12:9841200-9847600 Weak transcription Fetal Intestine Small intestine
42 chr12:9841200-9847800 Weak transcription Thymus Thymus
43 chr12:9841800-9848600 Strong transcription Primary T helper naive cells from peripheral blood blood
44 chr12:9841800-9854800 Weak transcription Right Ventricle heart
45 chr12:9841800-9863200 Weak transcription HSMMtube muscle
46 chr12:9842000-9846800 Weak transcription Fetal Muscle Trunk muscle
47 chr12:9842000-9847000 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr12:9842000-9847400 Weak transcription Duodenum Mucosa Duodenum
49 chr12:9842000-9848200 Strong transcription Primary B cells from cord blood blood
50 chr12:9842200-9846800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015