Variant report

Variant	rs10772329
Chromosome Location	chr12:10739158-10739159
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10738663..10741560-chr12:10743717..10745225,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10734838	0.83[ASN][1000 genomes]
rs10743910	0.83[ASN][1000 genomes]
rs10772312	0.86[ASN][1000 genomes]
rs10772315	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10772316	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10772317	0.83[ASN][1000 genomes]
rs10772319	0.83[ASN][1000 genomes]
rs10772321	0.83[ASN][1000 genomes]
rs10772323	0.83[ASN][1000 genomes]
rs10772324	0.83[ASN][1000 genomes]
rs10772325	0.82[ASN][1000 genomes]
rs10772326	0.83[ASN][1000 genomes]
rs10772327	0.83[ASN][1000 genomes]
rs10845161	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10845163	0.81[ASN][1000 genomes]
rs10845164	0.82[ASN][1000 genomes]
rs10845165	0.84[ASN][1000 genomes]
rs10845166	0.83[ASN][1000 genomes]
rs10845172	0.83[ASN][1000 genomes]
rs10845174	0.84[ASN][1000 genomes]
rs10845175	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11053857	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11053859	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11053865	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053869	0.83[ASN][1000 genomes]
rs11053870	0.83[ASN][1000 genomes]
rs11053871	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053873	0.80[ASN][1000 genomes]
rs11611202	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12423957	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1915322	0.82[ASN][1000 genomes]
rs1915323	0.83[ASN][1000 genomes]
rs2002156	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2002157	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2125092	0.83[ASN][1000 genomes]
rs2125094	0.82[ASN][1000 genomes]
rs2125095	0.83[ASN][1000 genomes]
rs2168750	0.83[ASN][1000 genomes]
rs2417746	0.82[ASN][1000 genomes]
rs2417747	0.81[ASN][1000 genomes]
rs2417748	0.82[ASN][1000 genomes]
rs2607883	0.82[ASN][1000 genomes]
rs2607888	0.82[ASN][1000 genomes]
rs28403396	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28701155	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3816567	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3867478	0.83[ASN][1000 genomes]
rs3983544	0.83[ASN][1000 genomes]
rs3983545	0.83[ASN][1000 genomes]
rs3983546	0.83[ASN][1000 genomes]
rs3983547	0.81[ASN][1000 genomes]
rs4237928	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4476009	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4763528	0.83[ASN][1000 genomes]
rs4763531	0.83[ASN][1000 genomes]
rs4763532	0.83[ASN][1000 genomes]
rs4763547	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4763548	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4763550	0.82[ASN][1000 genomes]
rs4763551	0.82[ASN][1000 genomes]
rs4763553	0.82[ASN][1000 genomes]
rs4763555	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4763559	0.83[ASN][1000 genomes]
rs55837119	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58917785	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60367665	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61913124	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6488307	0.83[ASN][1000 genomes]
rs7134658	0.83[ASN][1000 genomes]
rs7134908	0.83[ASN][1000 genomes]
rs7136964	0.85[ASN][1000 genomes]
rs7137465	0.84[ASN][1000 genomes]
rs7306285	0.83[ASN][1000 genomes]
rs7306724	0.84[ASN][1000 genomes]
rs7311860	0.82[ASN][1000 genomes]
rs7965052	0.82[ASN][1000 genomes]
rs7978850	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7980411	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039120	chr12:10675930-10755446	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10725600-10743600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:10725600-10765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:10725800-10743200	Weak transcription	NHDF-Ad	bronchial
4	chr12:10725800-10753400	Weak transcription	Osteobl	bone
5	chr12:10725800-10761400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:10726400-10743200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:10726400-10759800	Weak transcription	NHLF	lung
8	chr12:10726800-10756600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:10730000-10762000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr12:10730600-10764800	Weak transcription	Lung	lung
11	chr12:10730800-10746200	Weak transcription	Fetal Thymus	thymus
12	chr12:10730800-10758400	Weak transcription	NHEK	skin
13	chr12:10731200-10744000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr12:10731200-10756400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:10731400-10753200	Weak transcription	Primary B cells from cord blood	blood
16	chr12:10731600-10742400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr12:10731600-10760800	Weak transcription	Fetal Brain Female	brain
18	chr12:10732000-10759600	Weak transcription	Fetal Intestine Large	intestine
19	chr12:10732000-10759800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr12:10732200-10745800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr12:10732200-10759600	Weak transcription	Left Ventricle	heart
22	chr12:10732200-10761400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr12:10732200-10764800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr12:10732400-10743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr12:10732400-10759600	Weak transcription	Colon Smooth Muscle	Colon
26	chr12:10732400-10764200	Weak transcription	Pancreas	Pancrea
27	chr12:10732600-10759600	Weak transcription	HMEC	breast
28	chr12:10732800-10759600	Weak transcription	Brain Hippocampus Middle	brain
29	chr12:10733200-10740200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr12:10733400-10743800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr12:10733400-10746000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr12:10733400-10748000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr12:10733400-10759600	Weak transcription	HUVEC	blood vessel
34	chr12:10733600-10744200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:10733600-10759800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr12:10733800-10743800	Weak transcription	Adipose Nuclei	Adipose
37	chr12:10733800-10753400	Weak transcription	Dnd41	blood
38	chr12:10733800-10760000	Weak transcription	Fetal Brain Male	brain
39	chr12:10734000-10739600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr12:10734000-10742600	Weak transcription	Ovary	ovary
41	chr12:10734000-10747600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr12:10734000-10753200	Weak transcription	Liver	Liver
43	chr12:10734000-10759400	Weak transcription	Fetal Lung	lung
44	chr12:10734000-10764000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr12:10734000-10764600	Weak transcription	Thymus	Thymus
46	chr12:10734200-10743200	Weak transcription	Primary T cells from cord blood	blood
47	chr12:10734200-10743200	Weak transcription	A549	lung
48	chr12:10734200-10743200	Weak transcription	HSMM	muscle
49	chr12:10734200-10743800	Weak transcription	Aorta	Aorta
50	chr12:10734200-10743800	Weak transcription	GM12878-XiMat	blood

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