Variant report

Variant	rs10772510
Chromosome Location	chr12:12021657-12021658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12578955	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819115	0.84[CEU][hapmap]
rs2238129	0.81[CEU][hapmap]
rs2416944	0.85[CEU][hapmap]
rs2710266	0.81[CEU][hapmap]
rs2723804	0.81[CEU][hapmap]
rs2855707	0.81[CEU][hapmap]
rs34938120	0.84[EUR][1000 genomes]
rs6488463	0.81[CEU][hapmap]
rs7973930	0.91[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832331	chr12:11925095-12114451	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv516796	chr12:12013985-12027745	Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10772510	ZNF705A	cis	parietal	SCAN
rs10772510	ARHGDIB	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11980800-12022600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:11987600-12038000	Weak transcription	Hela-S3	cervix
3	chr12:11989400-12023000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:11996400-12022600	Weak transcription	HSMM	muscle
5	chr12:12005000-12022400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr12:12009400-12030800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:12014600-12030600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:12014600-12030800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:12015000-12022200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:12015400-12022200	Weak transcription	Esophagus	oesophagus
11	chr12:12016600-12022600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr12:12016800-12021800	Weak transcription	Lung	lung
13	chr12:12017000-12022200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr12:12017000-12022200	Weak transcription	Gastric	stomach
15	chr12:12017200-12022200	Weak transcription	Pancreas	Pancrea
16	chr12:12017200-12022400	Weak transcription	Ovary	ovary
17	chr12:12017200-12022600	Weak transcription	Placenta	Placenta
18	chr12:12017200-12022600	Weak transcription	NHLF	lung
19	chr12:12017200-12030600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr12:12017200-12030800	Weak transcription	NHDF-Ad	bronchial
21	chr12:12017400-12022200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:12018000-12022200	Weak transcription	Spleen	Spleen
23	chr12:12018000-12028400	Weak transcription	Brain Hippocampus Middle	brain
24	chr12:12018800-12027200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr12:12019000-12026400	Strong transcription	Fetal Thymus	thymus
26	chr12:12019400-12021800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr12:12019400-12022400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr12:12019400-12027000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:12019600-12021800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr12:12019600-12022000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr12:12019600-12022200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr12:12019600-12022200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr12:12019600-12022200	Weak transcription	Colonic Mucosa	Colon
34	chr12:12019600-12022200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr12:12019600-12022200	Weak transcription	Osteobl	bone
36	chr12:12019600-12022400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr12:12019600-12022600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr12:12019600-12022600	Weak transcription	Brain Substantia Nigra	brain
39	chr12:12019600-12023400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:12019600-12024800	Strong transcription	Dnd41	blood
41	chr12:12019600-12026800	Strong transcription	Primary B cells from cord blood	blood
42	chr12:12019600-12028000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr12:12019600-12028200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr12:12019600-12028200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr12:12019600-12028200	Weak transcription	Stomach Mucosa	stomach
46	chr12:12019600-12030600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr12:12019600-12030600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr12:12019800-12021800	Weak transcription	Left Ventricle	heart
49	chr12:12019800-12022400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr12:12019800-12022400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links