Variant report

Variant	rs34938120
Chromosome Location	chr12:12027342-12027343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:12026018..12028025-chr12:12033109..12035684,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10772510	0.84[EUR][1000 genomes]
rs12578955	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832331	chr12:11925095-12114451	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv516796	chr12:12013985-12027745	Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3480297	chr12:12024485-12028983	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3506269	chr12:12025185-12028783	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3480319	chr12:12025310-12028558	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1850811	chr12:12025363-12027745	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv557577	chr12:12025363-12030052	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3506272	chr12:12025914-12028453	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2554143	chr12:12026165-12028186	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3421652	chr12:12026310-12028858	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv826257	chr12:12026429-12027840	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1817746	chr12:12026506-12027745	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1821820	chr12:12026506-12027745	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1821959	chr12:12026506-12027745	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1824959	chr12:12026506-12027745	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1829513	chr12:12026506-12027745	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1845913	chr12:12026506-12027745	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1850362	chr12:12026506-12027745	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1851042	chr12:12026506-12027745	Strong transcription Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv557579	chr12:12026506-12027745	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv557580	chr12:12026506-12030052	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv557582	chr12:12026557-12030052	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11987600-12038000	Weak transcription	Hela-S3	cervix
2	chr12:12009400-12030800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:12014600-12030600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:12014600-12030800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:12017200-12030600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr12:12017200-12030800	Weak transcription	NHDF-Ad	bronchial
7	chr12:12018000-12028400	Weak transcription	Brain Hippocampus Middle	brain
8	chr12:12019600-12028000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr12:12019600-12028200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:12019600-12028200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr12:12019600-12028200	Weak transcription	Stomach Mucosa	stomach
12	chr12:12019600-12030600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:12019600-12030600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr12:12019800-12030400	Weak transcription	Fetal Heart	heart
15	chr12:12019800-12031200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr12:12020000-12028200	Weak transcription	Psoas Muscle	Psoas
17	chr12:12020000-12028400	Weak transcription	Brain Anterior Caudate	brain
18	chr12:12020000-12031000	Weak transcription	HepG2	liver
19	chr12:12020000-12037400	Weak transcription	Fetal Brain Female	brain
20	chr12:12020200-12028200	Weak transcription	A549	lung
21	chr12:12020200-12039600	Weak transcription	Fetal Kidney	kidney
22	chr12:12021400-12030600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr12:12022600-12028200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:12022800-12029600	Weak transcription	Brain Germinal Matrix	brain
25	chr12:12023000-12030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:12023000-12030800	Weak transcription	Ovary	ovary
27	chr12:12023400-12028400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr12:12023400-12028400	Weak transcription	Left Ventricle	heart
29	chr12:12023400-12028600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr12:12023400-12028800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr12:12023400-12030400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr12:12023400-12030600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr12:12023400-12030600	Weak transcription	NHLF	lung
34	chr12:12023400-12030800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr12:12023600-12028200	Weak transcription	Small Intestine	intestine
36	chr12:12023600-12028400	Weak transcription	Brain Substantia Nigra	brain
37	chr12:12023600-12030400	Weak transcription	NH-A	brain
38	chr12:12023800-12028400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr12:12024000-12027800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr12:12024000-12028000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr12:12024000-12028200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr12:12024000-12028200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr12:12024000-12028200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr12:12024000-12028400	Weak transcription	HUVEC	blood vessel
45	chr12:12024000-12028800	Weak transcription	HSMMtube	muscle
46	chr12:12024000-12030600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr12:12024000-12030600	Weak transcription	Esophagus	oesophagus
48	chr12:12024000-12030800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr12:12024000-12030800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr12:12024000-12030800	Weak transcription	Pancreas	Pancrea

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