Variant report

Variant	rs10772546
Chromosome Location	chr12:12436949-12436950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:12420321..12422188-chr12:12434856..12437059,2	MCF-7	breast:
2	chr12:12428084..12430212-chr12:12436853..12438426,2	K562	blood:
3	chr12:12435889..12438304-chr12:12442980..12444764,2	MCF-7	breast:
4	chr12:12435921..12437917-chr12:12447331..12449825,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10431302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10431304	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10845489	0.81[CEU][hapmap]
rs10845501	0.82[EUR][1000 genomes]
rs10845507	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11054754	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11609634	0.81[CEU][hapmap]
rs2284396	0.81[CEU][hapmap]
rs4477532	0.81[CEU][hapmap]
rs4763794	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4763795	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7294695	0.81[CEU][hapmap]
rs7302808	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7956267	0.81[CHB][hapmap]
rs7962366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965201	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7975772	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979787	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9300240	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898806	chr12:12264471-12453808	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
3	nsv832332	chr12:12344027-12484966	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12433800-12437600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr12:12433800-12437600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:12434000-12437200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:12434400-12443000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:12434800-12437600	Enhancers	Fetal Brain Male	brain
6	chr12:12435000-12437000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:12435200-12437000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr12:12435200-12437000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:12435200-12437000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:12435200-12437000	Enhancers	Hela-S3	cervix
11	chr12:12435200-12437000	Enhancers	NH-A	brain
12	chr12:12435200-12437600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr12:12435400-12437000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr12:12435400-12437600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr12:12435400-12437800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr12:12436000-12437000	Enhancers	Stomach Mucosa	stomach
17	chr12:12436200-12437000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr12:12436200-12437000	Enhancers	Pancreas	Pancrea
19	chr12:12436400-12437200	Enhancers	Placenta	Placenta
20	chr12:12436400-12437200	Enhancers	Ovary	ovary
21	chr12:12436400-12437600	Enhancers	A549	lung
22	chr12:12436600-12437000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:12436600-12437000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:12436600-12437000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr12:12436600-12437000	Enhancers	Spleen	Spleen
26	chr12:12436600-12446200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr12:12436800-12437000	Enhancers	Aorta	Aorta
28	chr12:12436800-12437800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr12:12436800-12438200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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