Variant report

Variant	rs7965201
Chromosome Location	chr12:12437181-12437182
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10431302	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10431304	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10772546	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10845507	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11054754	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4763794	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763795	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302808	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7962366	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7975772	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7979787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300240	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898806	chr12:12264471-12453808	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
3	nsv832332	chr12:12344027-12484966	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12433800-12437600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr12:12433800-12437600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:12434000-12437200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:12434400-12443000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:12434800-12437600	Enhancers	Fetal Brain Male	brain
6	chr12:12435200-12437600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr12:12435400-12437600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr12:12435400-12437800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:12436400-12437200	Enhancers	Placenta	Placenta
10	chr12:12436400-12437200	Enhancers	Ovary	ovary
11	chr12:12436400-12437600	Enhancers	A549	lung
12	chr12:12436600-12446200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr12:12436800-12437800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:12436800-12438200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:12437000-12437400	Weak transcription	Hela-S3	cervix
16	chr12:12437000-12442200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr12:12437000-12447600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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