Variant report

Variant	rs10773090
Chromosome Location	chr12:122836576-122836577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:122834378..122836810-chr12:122844782..122846418,2	K562	blood:
2	chr12:122834927..122837847-chr12:122979754..122981813,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10161184	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10161488	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10773108	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10773117	0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.81[MKK][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10846714	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10846852	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10846912	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs11057514	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11057522	1.00[CEU][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11057686	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11057705	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11057813	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11057819	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11058562	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs1129167	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11503023	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11610303	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11830957	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12812332	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs12817342	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs12818177	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12828876	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12829449	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1392142	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs1532579	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs1553178	0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2341438	0.87[EUR][1000 genomes]
rs3825096	0.85[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4758658	1.00[ASW][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap]
rs4758664	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4758665	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4758693	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4758695	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs61021925	0.88[EUR][1000 genomes]
rs6488947	0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.81[MKK][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7305360	0.87[EUR][1000 genomes]
rs7313121	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7313284	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959550	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs7961258	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7964981	0.84[EUR][1000 genomes]
rs7970007	0.80[EUR][1000 genomes]
rs7972832	0.89[EUR][1000 genomes]
rs7973480	0.89[EUR][1000 genomes]
rs7974160	1.00[CEU][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7975492	1.00[CEU][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7978119	0.80[EUR][1000 genomes]
rs7978636	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs868181	1.00[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9788228	0.94[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122791200-122841600	Strong transcription	Placenta	Placenta
2	chr12:122804200-122839000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:122812800-122839400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:122812800-122839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:122812800-122844000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:122812800-122850600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:122813000-122839400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr12:122818200-122838200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:122818400-122852800	Weak transcription	Stomach Mucosa	stomach
10	chr12:122818600-122837000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:122818600-122844200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:122819600-122837000	Weak transcription	Thymus	Thymus
13	chr12:122819600-122839200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:122819800-122837000	Weak transcription	Colonic Mucosa	Colon
15	chr12:122819800-122837400	Weak transcription	Small Intestine	intestine
16	chr12:122820200-122839400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:122822400-122837000	Weak transcription	GM12878-XiMat	blood
18	chr12:122823000-122840200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:122823200-122839400	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr12:122825800-122839200	Weak transcription	Fetal Kidney	kidney
21	chr12:122826000-122837000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr12:122826200-122836800	Weak transcription	Psoas Muscle	Psoas
23	chr12:122827200-122837000	Weak transcription	Right Ventricle	heart
24	chr12:122827200-122837000	Weak transcription	Spleen	Spleen
25	chr12:122828800-122841200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr12:122829800-122837000	Weak transcription	HMEC	breast
27	chr12:122830400-122841200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr12:122830600-122839600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr12:122830600-122840600	Strong transcription	HSMMtube	muscle
30	chr12:122830600-122840800	Strong transcription	A549	lung
31	chr12:122830600-122841000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr12:122830600-122841200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:122830600-122841200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr12:122830600-122841200	Strong transcription	Brain Germinal Matrix	brain
35	chr12:122830800-122836600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr12:122830800-122837000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr12:122830800-122839600	Strong transcription	Fetal Muscle Trunk	muscle
38	chr12:122830800-122840400	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr12:122830800-122841200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr12:122830800-122841800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr12:122830800-122842400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr12:122831000-122841000	Strong transcription	Fetal Stomach	stomach
43	chr12:122831200-122840600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr12:122831200-122840800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr12:122831600-122839000	Weak transcription	Brain Substantia Nigra	brain
46	chr12:122832000-122836800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr12:122832200-122836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr12:122832200-122836800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr12:122832200-122837000	Weak transcription	Brain Anterior Caudate	brain
50	chr12:122832200-122837000	Weak transcription	Esophagus	oesophagus

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