Variant report

Variant	rs10846852
Chromosome Location	chr12:122912087-122912088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:122911995-122912195	A549	lung:	n/a	chr12:122912138-122912149
2	CEBPB	chr12:122912028-122912226	H1-hESC	embryonic stem cell:	n/a	chr12:122912138-122912149
3	ZNF384	chr12:122912047-122912241	K562	blood:	n/a	n/a
4	CEBPB	chr12:122911988-122912318	HepG2	liver:	n/a	chr12:122912138-122912149
5	CEBPB	chr12:122912057-122912212	K562	blood:	n/a	chr12:122912138-122912149
6	CEBPB	chr12:122912061-122912205	HepG2	liver:	n/a	chr12:122912138-122912149
7	CEBPB	chr12:122911989-122912242	K562	blood:	n/a	chr12:122912138-122912149
8	CEBPB	chr12:122911962-122912315	K562	blood:	n/a	chr12:122912138-122912149

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:122908026..122909753-chr12:122911517..122913125,2	K562	blood:
2	chr12:122906576..122908783-chr12:122910995..122912535,2	MCF-7	breast:

Variant related genes	Relation type
CLIP1	TF binding region
ENSG00000130779	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10161184	0.83[EUR][1000 genomes]
rs10161488	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10744218	0.92[EUR][1000 genomes]
rs10773090	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10773108	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10773117	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10773162	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10846714	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10846871	0.98[ASN][1000 genomes]
rs10846899	0.85[ASN][1000 genomes]
rs10846912	0.92[EUR][1000 genomes]
rs11057514	0.81[EUR][1000 genomes]
rs11057686	0.84[EUR][1000 genomes]
rs11057813	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11057819	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11058178	0.81[ASN][1000 genomes]
rs11058272	0.89[EUR][1000 genomes]
rs1129167	0.83[EUR][1000 genomes]
rs11503023	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11830957	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314537	0.92[EUR][1000 genomes]
rs12812332	0.93[EUR][1000 genomes]
rs12818177	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12819355	0.82[ASN][1000 genomes]
rs12828876	0.82[EUR][1000 genomes]
rs12829449	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1392142	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1532579	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1553178	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2341438	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3825096	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4758664	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4758665	0.81[EUR][1000 genomes]
rs4758693	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4758695	0.84[ASN][1000 genomes]
rs61021925	0.85[EUR][1000 genomes]
rs6488947	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7305360	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7313121	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7313284	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7953204	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7955241	0.85[ASN][1000 genomes]
rs7959550	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7961258	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7964981	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7970007	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7972832	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7973480	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7974160	0.82[EUR][1000 genomes]
rs7975492	0.82[EUR][1000 genomes]
rs7978119	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7978636	0.81[EUR][1000 genomes]
rs9788228	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122908400-122922000	Weak transcription	Right Atrium	heart
2	chr12:122908600-122916000	Weak transcription	Liver	Liver
3	chr12:122908800-122919000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:122908800-122921800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:122910400-122915000	Weak transcription	A549	lung
6	chr12:122910400-122915000	Weak transcription	HepG2	liver
7	chr12:122911800-122913000	Enhancers	Placenta	Placenta

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