Variant report

Variant	rs11058272
Chromosome Location	chr12:122948092-122948093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122883342..122886247-chr12:122947542..122950684,3	MCF-7	breast:
2	chr12:122906584..122908969-chr12:122947316..122950216,3	MCF-7	breast:
3	chr12:122906206..122907828-chr12:122947646..122949650,2	MCF-7	breast:
4	chr12:122905739..122907379-chr12:122946409..122949059,2	K562	blood:
5	chr12:122947417..122950530-chr12:122951037..122954189,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130779	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10161488	0.83[EUR][1000 genomes]
rs10744218	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10773108	0.81[EUR][1000 genomes]
rs10773117	0.83[EUR][1000 genomes]
rs10773162	0.90[EUR][1000 genomes]
rs10846852	0.89[EUR][1000 genomes]
rs10846912	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10846968	0.87[ASN][1000 genomes]
rs10846993	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11057813	0.81[EUR][1000 genomes]
rs11057819	0.83[EUR][1000 genomes]
rs11058562	0.81[AFR][1000 genomes]
rs11503023	0.81[EUR][1000 genomes]
rs11610303	0.89[AFR][1000 genomes]
rs11830957	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12314537	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12371048	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12812332	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12817342	0.83[AFR][1000 genomes]
rs12818177	0.81[EUR][1000 genomes]
rs12829449	0.88[EUR][1000 genomes]
rs1392142	0.87[EUR][1000 genomes]
rs1532579	0.87[EUR][1000 genomes]
rs2341438	0.89[EUR][1000 genomes]
rs3825096	0.87[EUR][1000 genomes]
rs4758657	0.81[ASN][1000 genomes]
rs4758658	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4758664	0.88[EUR][1000 genomes]
rs61956096	0.86[ASN][1000 genomes]
rs6416295	0.81[ASN][1000 genomes]
rs6488947	0.82[EUR][1000 genomes]
rs6489014	0.81[ASN][1000 genomes]
rs7132830	0.87[ASN][1000 genomes]
rs7303688	0.81[ASN][1000 genomes]
rs7305360	0.87[EUR][1000 genomes]
rs7311573	0.81[ASN][1000 genomes]
rs7486949	0.81[ASN][1000 genomes]
rs7955513	0.81[ASN][1000 genomes]
rs7959550	0.89[EUR][1000 genomes]
rs7961258	0.83[EUR][1000 genomes]
rs7964981	0.90[EUR][1000 genomes]
rs7970007	0.91[EUR][1000 genomes]
rs7972832	0.87[EUR][1000 genomes]
rs7973480	0.87[EUR][1000 genomes]
rs7978119	0.91[EUR][1000 genomes]
rs9788228	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv973945	chr12:122923254-122958354	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122922800-122960400	Weak transcription	Right Atrium	heart
2	chr12:122938800-122957000	Weak transcription	Thymus	Thymus
3	chr12:122939600-122955200	Weak transcription	Fetal Thymus	thymus
4	chr12:122941200-122957200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:122943200-122948400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:122943600-122951400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr12:122944200-122948200	Weak transcription	A549	lung
8	chr12:122944200-122948400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr12:122944200-122948400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:122944400-122957000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:122945400-122948200	Weak transcription	HepG2	liver
12	chr12:122945800-122956000	Weak transcription	GM12878-XiMat	blood
13	chr12:122946800-122949800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:122947400-122951600	Enhancers	Placenta	Placenta
15	chr12:122947600-122948400	Weak transcription	Fetal Intestine Small	intestine
16	chr12:122947600-122948400	Weak transcription	NHLF	lung
17	chr12:122948000-122948400	Enhancers	Hela-S3	cervix
18	chr12:122948000-122948800	Enhancers	Fetal Intestine Large	intestine
19	chr12:122948000-122949800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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