Variant report

Variant	rs10773104
Chromosome Location	chr12:122856627-122856628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122854927..122856628-chr12:122883485..122885618,2	K562	blood:
2	chr12:122852431..122854789-chr12:122856151..122858471,2	K562	blood:
3	chr12:122854975..122857897-chr12:122863332..122865835,2	K562	blood:

Variant related genes	Relation type
ENSG00000130779	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10161534	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734915	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734918	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10744192	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10744208	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10744209	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10744210	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10744211	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10744217	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10773075	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10773088	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10773103	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773167	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10773172	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10773176	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10773178	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10846664	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10846699	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846746	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846764	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846792	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10846826	0.85[AMR][1000 genomes]
rs10846830	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10846835	0.84[AMR][1000 genomes]
rs10846920	0.85[ASN][1000 genomes]
rs10846921	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10846931	0.80[EUR][1000 genomes]
rs11057786	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11057797	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11057882	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11058034	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11058226	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11058251	0.82[EUR][1000 genomes]
rs11616082	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11836188	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12372756	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12423420	0.90[ASN][1000 genomes]
rs12425970	0.80[ASN][1000 genomes]
rs12581249	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553179	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1803290	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1818050	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973463	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2173582	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2341439	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485674	0.83[EUR][1000 genomes]
rs28730465	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34129612	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3817011	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4039670	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4758643	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4758644	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4758645	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4758646	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4758648	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4758662	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4758666	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4758667	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4997380	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55834409	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488933	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6488939	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488951	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488958	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6489002	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7135419	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7294559	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7301515	0.86[EUR][1000 genomes]
rs7316114	0.81[EUR][1000 genomes]
rs7397299	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7398014	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7952868	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7953007	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7956480	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7964138	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7969429	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7973869	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7974262	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7975747	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9788145	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122838000-122868000	Weak transcription	Fetal Lung	lung
2	chr12:122839600-122861800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:122839600-122871000	Weak transcription	Fetal Kidney	kidney
4	chr12:122840000-122861800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr12:122840000-122862600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:122840200-122857800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:122841000-122872600	Weak transcription	Fetal Brain Male	brain
8	chr12:122844400-122862000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:122846000-122865600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:122846000-122883800	Weak transcription	Aorta	Aorta
11	chr12:122846200-122859400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:122846200-122860800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr12:122846200-122861600	Weak transcription	Thymus	Thymus
14	chr12:122846200-122862000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr12:122846400-122860400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr12:122846600-122861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr12:122848200-122860400	Weak transcription	Fetal Thymus	thymus
18	chr12:122848200-122861400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr12:122848400-122860400	Weak transcription	Colonic Mucosa	Colon
20	chr12:122848600-122861400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:122851400-122859400	Weak transcription	Left Ventricle	heart
22	chr12:122851400-122860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:122851400-122864200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr12:122851600-122859400	Weak transcription	Fetal Heart	heart
25	chr12:122851800-122857200	Weak transcription	Brain Angular Gyrus	brain
26	chr12:122851800-122859400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr12:122851800-122862000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr12:122852000-122861800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr12:122852000-122869800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr12:122852000-122869800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr12:122852200-122859400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr12:122852200-122860600	Weak transcription	Brain Anterior Caudate	brain
33	chr12:122852200-122860800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr12:122852200-122861600	Weak transcription	Brain Hippocampus Middle	brain
35	chr12:122852200-122861800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr12:122852200-122861800	Weak transcription	Brain Substantia Nigra	brain
37	chr12:122852200-122862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr12:122852200-122867400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:122852200-122869800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr12:122852200-122870200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr12:122852800-122867800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr12:122853200-122857000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr12:122853200-122861800	Weak transcription	HMEC	breast
44	chr12:122853200-122868600	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr12:122853400-122858600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr12:122853400-122859400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr12:122853400-122862000	Weak transcription	Ovary	ovary
48	chr12:122853600-122857200	Weak transcription	Fetal Intestine Large	intestine
49	chr12:122853600-122860800	Weak transcription	Small Intestine	intestine
50	chr12:122853800-122858400	Strong transcription	Dnd41	blood

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