Variant report

Variant	rs10846826
Chromosome Location	chr12:122894987-122894988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122887135..122888989-chr12:122893412..122896084,2	MCF-7	breast:
2	chr12:122894837..122901534-chr12:122904361..122908038,12	MCF-7	breast:
3	chr12:122884617..122887526-chr12:122893743..122896381,3	K562	blood:

Variant related genes	Relation type
ENSG00000130779	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10734918	0.95[AMR][1000 genomes]
rs10744192	0.81[AMR][1000 genomes]
rs10744208	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10744209	0.90[AMR][1000 genomes]
rs10744210	0.88[AMR][1000 genomes]
rs10744211	0.90[AMR][1000 genomes]
rs10773088	0.80[AMR][1000 genomes]
rs10773103	0.85[AMR][1000 genomes]
rs10773104	0.85[AMR][1000 genomes]
rs10773167	0.90[AMR][1000 genomes]
rs10846664	0.80[AMR][1000 genomes]
rs10846699	0.86[AMR][1000 genomes]
rs10846746	0.90[AMR][1000 genomes]
rs10846764	0.89[AMR][1000 genomes]
rs10846792	0.95[AMR][1000 genomes]
rs10846830	0.95[AMR][1000 genomes]
rs10846835	0.89[AMR][1000 genomes]
rs11057786	0.86[AMR][1000 genomes]
rs11057797	0.86[AMR][1000 genomes]
rs11057882	0.94[AMR][1000 genomes]
rs11058034	0.93[AMR][1000 genomes]
rs11616082	0.89[AMR][1000 genomes]
rs11836188	0.88[AMR][1000 genomes]
rs12581249	0.90[AMR][1000 genomes]
rs1553179	0.80[AMR][1000 genomes]
rs1803290	0.88[AMR][1000 genomes]
rs1818050	0.86[AMR][1000 genomes]
rs1973463	0.84[AMR][1000 genomes]
rs2173582	0.80[AMR][1000 genomes]
rs2341439	0.84[AMR][1000 genomes]
rs28730465	0.89[AMR][1000 genomes]
rs34129612	0.92[AMR][1000 genomes]
rs4039670	0.80[AMR][1000 genomes]
rs4758643	0.95[AMR][1000 genomes]
rs4758648	0.82[AMR][1000 genomes]
rs4758662	0.95[AMR][1000 genomes]
rs4758666	0.82[AMR][1000 genomes]
rs55834409	0.88[AMR][1000 genomes]
rs6488951	0.90[AMR][1000 genomes]
rs6488958	0.95[AMR][1000 genomes]
rs6489002	0.90[AMR][1000 genomes]
rs7135419	0.95[AMR][1000 genomes]
rs7294559	0.80[AMR][1000 genomes]
rs7952868	0.83[AMR][1000 genomes]
rs7969429	0.95[AMR][1000 genomes]
rs7973869	0.81[AMR][1000 genomes]
rs7974262	0.95[AMR][1000 genomes]
rs9788145	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122860600-122905000	Weak transcription	Brain Germinal Matrix	brain
2	chr12:122862800-122895600	Weak transcription	Small Intestine	intestine
3	chr12:122863400-122897400	Weak transcription	Fetal Brain Female	brain
4	chr12:122863400-122897800	Weak transcription	Brain Substantia Nigra	brain
5	chr12:122863800-122905000	Weak transcription	Dnd41	blood
6	chr12:122884600-122897600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:122884600-122905200	Weak transcription	Colonic Mucosa	Colon
8	chr12:122885200-122897800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:122885200-122897800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr12:122885200-122902400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:122885200-122902600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr12:122885200-122904600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr12:122885200-122905200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr12:122885200-122905400	Weak transcription	Fetal Thymus	thymus
15	chr12:122885200-122905400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr12:122885200-122906000	Weak transcription	Ovary	ovary
17	chr12:122885400-122895400	Weak transcription	Fetal Lung	lung
18	chr12:122885400-122896000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:122885400-122898200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr12:122885400-122905000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:122885600-122897000	Weak transcription	HUVEC	blood vessel
22	chr12:122885600-122897400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:122885600-122905400	Weak transcription	NH-A	brain
24	chr12:122886200-122896000	Weak transcription	Right Atrium	heart
25	chr12:122886200-122897600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr12:122886200-122905400	Weak transcription	Right Ventricle	heart
27	chr12:122887000-122896600	Weak transcription	Left Ventricle	heart
28	chr12:122887200-122906200	Weak transcription	Lung	lung
29	chr12:122887600-122904800	Weak transcription	HMEC	breast
30	chr12:122888000-122896400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr12:122888200-122895400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr12:122888200-122896600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr12:122888600-122895400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr12:122888600-122895400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr12:122888600-122897800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr12:122888800-122896200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr12:122888800-122897000	Weak transcription	Spleen	Spleen
38	chr12:122888800-122897400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr12:122888800-122905000	Weak transcription	Esophagus	oesophagus
40	chr12:122889000-122904600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr12:122889000-122905000	Weak transcription	Fetal Muscle Leg	muscle
42	chr12:122890000-122895800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr12:122890000-122905000	Weak transcription	Primary T cells from cord blood	blood
44	chr12:122890200-122895400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr12:122890200-122896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr12:122890400-122897400	Weak transcription	Primary B cells from cord blood	blood
47	chr12:122890600-122901200	Weak transcription	Fetal Stomach	stomach
48	chr12:122890800-122895400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr12:122891000-122895400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr12:122891000-122895600	Weak transcription	Psoas Muscle	Psoas

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